Factsheet for HORVU5Hr1G108990.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	HORVU4Hr1G019530.1	AT4G09570.1	19130088
AT2G01250.1	HORVU5Hr1G032550.3	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G461300.1	Wheat	cytosol	96.76	97.95
TraesCS5A01G452400.1	Wheat	nucleus	96.76	97.95
TraesCS5D01G462800.1	Wheat	cytosol, golgi	96.36	97.54
HORVU2Hr1G078780.1	Barley	cytosol	19.03	92.16
Os04t0605900-01	Rice	plastid	90.28	91.39
CDX95588	Canola	cytosol	19.84	90.74
Zm00001d002395_P002	Maize	cytosol, extracellular	89.07	90.16
Zm00001d026254_P001	Maize	plastid	89.47	89.84
KXG27062	Sorghum	cytosol	83.81	88.46
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	87.04	87.76
OQU75620	Sorghum	cytosol	87.04	87.76
KXG24783	Sorghum	cytosol	87.04	87.76
Zm00001d024373_P001	Maize	cytosol	86.64	86.64
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	31.17	86.52
Zm00001d030114_P001	Maize	cytosol	85.83	84.13
GSMUA_Achr4P05780_001	Banana	cytosol	83.0	84.02
GSMUA_Achr11P...	Banana	cytosol	81.78	82.79
GSMUA_Achr10P...	Banana	cytosol	80.97	81.97
HORVU7Hr1G057320.1	Barley	cytosol	14.98	80.43
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	31.58	80.41
CDY17884	Canola	cytosol, extracellular	76.92	78.51
Bra004806.1-P	Field mustard	cytosol	76.92	78.51
PGSC0003DMT400075548	Potato	cytosol	75.71	77.92
KRH44630	Soybean	cytosol	76.11	77.37
KRH47287	Soybean	nucleus	76.11	77.37
AT2G01250.1	Thale cress	cytosol	75.71	77.27
PGSC0003DMT400051218	Potato	cytosol	75.71	77.27
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	75.71	77.27
Bra037665.1-P	Field mustard	cytosol	75.71	77.27
CDX83440	Canola	cytosol, extracellular	75.71	76.95
KRH37351	Soybean	endoplasmic reticulum	75.3	76.86
Bra017461.1-P	Field mustard	cytosol	74.9	76.45
HORVU2Hr1G100970.4	Barley	mitochondrion	90.28	76.37
PGSC0003DMT400053653	Potato	cytosol	75.71	76.33
CDY41074	Canola	cytosol	74.49	76.03
CDY40393	Canola	cytosol	74.49	76.03
CDY25941	Canola	cytosol	74.49	76.03
CDY17686	Canola	cytosol	74.49	76.03
CDX77810	Canola	cytosol, extracellular	74.49	76.03
Bra014334.1-P	Field mustard	cytosol	74.49	76.03
Bra000341.1-P	Field mustard	cytosol	60.32	76.02
AT2G44120.2	Thale cress	cytosol	75.71	75.71
CDY37358	Canola	cytosol	74.09	75.62
AT3G13580.3	Thale cress	cytosol	74.49	75.41
Bra024895.1-P	Field mustard	cytosol	73.68	75.21
VIT_09s0054g00150.t01	Wine grape	cytosol	26.72	75.0
CDY30456	Canola	cytosol	76.52	73.54
GSMUA_Achr4P12660_001	Banana	cytosol	80.97	68.97
KRH12348	Soybean	endoplasmic reticulum, nucleus	75.71	68.75
KXG27000	Sorghum	plastid	74.9	66.07
OQU80131	Sorghum	cytosol	87.04	64.76
KRH25929	Soybean	cytosol	22.27	63.22
CDY23419	Canola	extracellular	76.52	63.0
CDY01953	Canola	cytosol	31.58	54.55
VIT_09s0054g00070.t01	Wine grape	extracellular	25.91	51.61
CDX79781	Canola	extracellular	25.91	40.0
HORVU5Hr1G109020.1	Barley	extracellular	7.69	25.68

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	EnsemblPlantsGene:HORVU5Hr1G108990	EnsemblPlants:HORVU5Hr1G108990.2
InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	UniProt:M0V292	PFAM:PF00327	PFAM:PF08079
ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc
InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI00029629E0
SEG:seg	:	:	:	:	:

Description

Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0V292]

Coordinates

chrchr5H:+:629052727..629054625

Molecular Weight (calculated)

28649.3 Da

IEP (calculated)

10.681

GRAVY (calculated)

-0.569

Length

247 amino acids

Sequence
(BLAST)

001: MSQMSSEAAK VVVPESVLLK RKREELWAAE KKTKAVEEKK KSTENRKVIF ARAKQYAEEY DAQDKELVQL KREARMKGGF YVSPEAKLLF VVRIRGINAM
101: HPKTKKILQL LRLRQIFNGV FLKVNKATIN MLRRVEPYVA YGYPNLKSVR ELIYKRGYGK LNKQRIPLTN NKVIEEGLGK HNIICIEDVV HEILTVGPHF
201: KEANNFLWPF KLKAPLGGLK KKRNHYVEGG DAGNREDYIN QLVRRMN

Best Arabidopsis Sequence Match ( AT2G44120.1 )
(BLAST)

001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.