CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	EES09373	AT4G09570.1	19130088
AT2G01250.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75637	Sorghum	cytosol	16.27	100.0
OQU75620	Sorghum	cytosol	73.8	100.0
KXG24783	Sorghum	cytosol	73.8	100.0
Zm00001d024373_P001	Maize	cytosol	71.99	96.76
CDX95588	Canola	cytosol	15.06	92.59
Os04t0605900-01	Rice	plastid	66.87	90.98
KXG27062	Sorghum	cytosol	63.86	90.6
TraesCS5D01G462800.1	Wheat	cytosol, golgi	64.76	88.11
TraesCS5B01G461300.1	Wheat	cytosol	64.76	88.11
TraesCS5A01G452400.1	Wheat	nucleus	64.76	88.11
HORVU5Hr1G108990.2	Barley	cytosol	64.76	87.04
HORVU2Hr1G078780.1	Barley	cytosol	13.25	86.27
TraesCS2A01G432600.1	Wheat	cytosol, unclear	62.95	85.66
TraesCS2D01G430500.1	Wheat	golgi	62.65	85.25
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	62.65	85.25
GSMUA_Achr4P05780_001	Banana	cytosol	62.35	84.84
GSMUA_Achr11P...	Banana	cytosol	62.05	84.43
GSMUA_Achr10P...	Banana	cytosol	62.05	84.43
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	22.29	83.15
KRH44630	Soybean	cytosol	58.73	80.25
KRH47287	Soybean	nucleus	58.13	79.42
Bra004806.1-P	Field mustard	cytosol	56.93	78.1
KRH37351	Soybean	endoplasmic reticulum	56.93	78.1
CDY17884	Canola	cytosol, extracellular	56.93	78.1
PGSC0003DMT400075548	Potato	cytosol	56.33	77.92
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	22.59	77.32
AT2G01250.1	Thale cress	cytosol	56.33	77.27
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	56.33	77.27
PGSC0003DMT400051218	Potato	cytosol	56.33	77.27
Bra037665.1-P	Field mustard	cytosol	56.33	77.27
AT3G13580.3	Thale cress	cytosol	56.63	77.05
CDY40393	Canola	cytosol	56.02	76.86
CDY17686	Canola	cytosol	56.02	76.86
Bra014334.1-P	Field mustard	cytosol	56.02	76.86
Bra017461.1-P	Field mustard	cytosol	56.02	76.86
CDX77810	Canola	cytosol, extracellular	56.02	76.86
CDX83440	Canola	cytosol, extracellular	56.02	76.54
CDY41074	Canola	cytosol	55.72	76.45
Bra024895.1-P	Field mustard	cytosol	55.72	76.45
CDY25941	Canola	cytosol	55.72	76.45
CDY37358	Canola	cytosol	55.72	76.45
PGSC0003DMT400053653	Potato	cytosol	56.33	76.33
Bra000341.1-P	Field mustard	cytosol	44.88	76.02
AT2G44120.2	Thale cress	cytosol	55.42	74.49
CDY30456	Canola	cytosol	57.23	73.93
HORVU2Hr1G100970.4	Barley	mitochondrion	63.86	72.6
KXG27000	Sorghum	plastid	61.14	72.5
GSMUA_Achr4P12660_001	Banana	cytosol	61.75	70.69
KRH12348	Soybean	endoplasmic reticulum, nucleus	57.53	70.22
CDY23419	Canola	extracellular	58.43	64.67
KRH25929	Soybean	cytosol	16.87	64.37
CDY01953	Canola	cytosol	23.8	55.24
CDX79781	Canola	extracellular	19.28	40.0
EES15262	Sorghum	cytosol	31.02	39.31

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A1Z5R9M6	ncoils:Coil	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	EnsemblPlants:OQU80131	ProteinID:OQU80131	ProteinID:OQU80131.1	PFAM:PF00327
PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N
InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	EnsemblPlantsGene:SORBI_3007G085001	SUPFAM:SSF55129
TIGRFAMs:TIGR01310	UniParc:UPI000B8BA757	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:10665106..10667842

Molecular Weight (calculated)

38211.9 Da

IEP (calculated)

11.000

GRAVY (calculated)

-0.640

Length

332 amino acids

Sequence
(BLAST)

001: MNQKPPSPVD QMRPKTFSFL LAPTPSDQQP ANRSRPISQN PNPSEQRKNP RSPISILLPL PRRHFLSPPH LGGRPPLLLF THTQVIEMSA AEAKAAVVPE
101: SVLRKRKREE QWAADKKEKA LADRKKALES RKIIFSRAKQ YAQEYDAQEK ELVQLKREAR LKGGFYVSPE AKLLFVVRIR GINAMHPKTR KILQLLRLRQ
201: IFNGVFLKVN KATINMLRRV EPYVAYGYPN LKSVRELIYK RGYGKLNKQR IPLSNNNVIE EGLGKHNIIC IEDLVHEIMT VGPHFKEANN FLWPFKLKAP
301: LGGLKKKRNH YVEGGDAGNR ENYINELIKR MN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.