Factsheet for Solyc07g008370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT2G01250.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051218	Potato	cytosol	100.0	100.0
CDX95588	Canola	cytosol	21.49	96.3
OQU75637	Sorghum	cytosol	20.66	92.59
KRH37351	Soybean	endoplasmic reticulum	85.95	85.95
Bra004806.1-P	Field mustard	cytosol	85.12	85.12
CDY17884	Canola	cytosol, extracellular	85.12	85.12
AT2G01250.1	Thale cress	cytosol	85.12	85.12
CDX77810	Canola	cytosol, extracellular	84.71	84.71
CDY25941	Canola	cytosol	84.71	84.71
CDY40393	Canola	cytosol	84.71	84.71
CDY17686	Canola	cytosol	84.71	84.71
Bra017461.1-P	Field mustard	cytosol	84.71	84.71
Bra014334.1-P	Field mustard	cytosol	84.71	84.71
CDY41074	Canola	cytosol	84.3	84.3
Bra024895.1-P	Field mustard	cytosol	84.3	84.3
CDY37358	Canola	cytosol	84.3	84.3
Bra037665.1-P	Field mustard	cytosol	83.88	83.88
VIT_09s0054g00140.t01	Wine grape	cytosol	64.46	83.87
AT2G44120.2	Thale cress	cytosol	84.3	82.59
AT3G13580.3	Thale cress	cytosol	83.06	82.38
VIT_00s2761g00010.t01	Wine grape	cytosol	17.36	82.35
Bra000341.1-P	Field mustard	cytosol	66.53	82.14
VIT_11s0052g00290.t01	Wine grape	cytosol	83.06	82.04
VIT_09s0054g00010.t01	Wine grape	cytosol	83.06	81.71
CDX83440	Canola	cytosol, extracellular	81.82	81.48
CDY30456	Canola	cytosol	84.71	79.77
VIT_00s1526g00010.t01	Wine grape	cytosol	17.77	79.63
HORVU2Hr1G078780.1	Barley	cytosol	16.53	78.43
VIT_09s0054g00060.t01	Wine grape	cytosol	39.67	78.05
Zm00001d002395_P002	Maize	cytosol, extracellular	78.51	77.87
VIT_09s0054g00210.t01	Wine grape	cytosol	47.93	77.85
Os04t0605900-01	Rice	plastid	78.1	77.46
TraesCS5B01G461300.1	Wheat	cytosol	78.1	77.46
TraesCS5A01G452400.1	Wheat	nucleus	78.1	77.46
Zm00001d026254_P001	Maize	plastid	78.51	77.24
TraesCS2A01G432600.1	Wheat	cytosol, unclear	77.69	77.05
TraesCS5D01G462800.1	Wheat	cytosol, golgi	77.69	77.05
Os08t0234000-01	Rice	nucleus	77.69	76.73
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	77.27	76.64
OQU75620	Sorghum	cytosol	77.27	76.33
KXG24783	Sorghum	cytosol	77.27	76.33
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	76.86	75.92
KRH12348	Soybean	endoplasmic reticulum, nucleus	85.12	75.74
HORVU5Hr1G108990.2	Barley	cytosol	77.27	75.71
KXG27062	Sorghum	cytosol	73.14	75.64
TraesCS2D01G430500.1	Wheat	golgi	75.62	75.0
Zm00001d024373_P001	Maize	cytosol	76.03	74.49
VIT_09s0054g00030.t01	Wine grape	cytosol	46.69	74.34
VIT_09s0054g00090.t01	Wine grape	cytosol	41.32	74.07
HORVU7Hr1G057320.1	Barley	cytosol	14.05	73.91
Zm00001d030114_P001	Maize	cytosol	75.21	72.22
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.45	71.91
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	27.27	68.04
CDY23419	Canola	extracellular	82.64	66.67
VIT_00s2416g00010.t01	Wine grape	cytosol	20.25	63.64
HORVU2Hr1G100970.4	Barley	mitochondrion	76.45	63.36
Zm00001d041838_P003	Maize	mitochondrion	32.64	63.2
CDY01953	Canola	cytosol	37.19	62.94
KXG27000	Sorghum	plastid	67.36	58.21
VIT_09s0054g00190.t01	Wine grape	cytosol	30.99	56.82
OQU80131	Sorghum	cytosol	77.27	56.33
Solyc06g068400.2.1	Tomato	cytosol, nucleus	49.17	48.37
CDX79781	Canola	extracellular	30.99	46.88
Solyc03g117060.2.1	Tomato	nucleus	47.93	38.67
GSMUA_AchrUn_...	Banana	cytosol	11.16	34.18
HORVU5Hr1G109020.1	Barley	extracellular	8.26	27.03

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	GO:GO:0000463	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	UniProt:K4CBV6	InterPro:L30_ferredoxin-like_sf
PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS
InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129
EnsemblPlantsGene:Solyc07g008370.2	EnsemblPlants:Solyc07g008370.2.1	TIGRFAMs:TIGR01310	UniParc:UPI0000601606	:	:

Description

No Description!

Coordinates

chr7:+:3146832..3149440

Molecular Weight (calculated)

28007.6 Da

IEP (calculated)

10.581

GRAVY (calculated)

-0.483

Length

242 amino acids

Sequence
(BLAST)

001: MGEGGVVVPE SVLKKQKRNE EWALVKKQEL AVAKKKSVEN RKLIYNRAKQ YAKEYSEQEK ELIRLKREAR LKGGFYVDPE AKLLFIIRIR GINAMPPQTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLHRV EPYVTYGYPN LKSIKELIYK RGYGKVDKQR IALTDNAVVE QVLGKHGIIC IEDLVHEIIT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Best Arabidopsis Sequence Match ( AT2G44120.1 )
(BLAST)

001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.