Factsheet for VIT_00s2761g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1526g00010.t01	Wine grape	cytosol	100.0	94.44
VIT_00s2416g00010.t01	Wine grape	cytosol	98.04	64.94
VIT_09s0054g00060.t01	Wine grape	cytosol	92.16	38.21
VIT_09s0054g00190.t01	Wine grape	cytosol	96.08	37.12
VIT_09s0054g00210.t01	Wine grape	cytosol	90.2	30.87
CDY01953	Canola	cytosol	82.35	29.37
VIT_09s0054g00030.t01	Wine grape	cytosol	86.27	28.95
VIT_09s0054g00140.t01	Wine grape	cytosol	96.08	26.34
GSMUA_AchrUn_...	Banana	cytosol	35.29	22.78
VIT_09s0054g00090.t01	Wine grape	cytosol	56.86	21.48
VIT_11s0052g00290.t01	Wine grape	cytosol	90.2	18.78
VIT_09s0054g00010.t01	Wine grape	cytosol	90.2	18.7
AT3G13580.3	Thale cress	cytosol	86.27	18.03
CDY40393	Canola	cytosol	84.31	17.77
CDY41074	Canola	cytosol	84.31	17.77
AT2G01250.1	Thale cress	cytosol	84.31	17.77
CDY37358	Canola	cytosol	84.31	17.77
Bra004806.1-P	Field mustard	cytosol	84.31	17.77
CDY17884	Canola	cytosol, extracellular	84.31	17.77
CDY17686	Canola	cytosol	84.31	17.77
Bra014334.1-P	Field mustard	cytosol	84.31	17.77
Bra017461.1-P	Field mustard	cytosol	84.31	17.77
CDY25941	Canola	cytosol	84.31	17.77
CDX77810	Canola	cytosol, extracellular	84.31	17.77
Bra037665.1-P	Field mustard	cytosol	84.31	17.77
Bra024895.1-P	Field mustard	cytosol	84.31	17.77
PGSC0003DMT400075548	Potato	cytosol	82.35	17.5
AT2G44120.2	Thale cress	cytosol	84.31	17.41
PGSC0003DMT400051218	Potato	cytosol	82.35	17.36
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	82.35	17.36
CDX83440	Canola	cytosol, extracellular	82.35	17.28
CDX79781	Canola	extracellular	52.94	16.88
PGSC0003DMT400053653	Potato	cytosol	80.39	16.73
CDY30456	Canola	cytosol	84.31	16.73
CDY23419	Canola	extracellular	84.31	14.33
Bra000341.1-P	Field mustard	cytosol	50.98	13.27
VIT_09s0070g00130.t01	Wine grape	cytosol	52.94	10.98
VIT_09s0054g00150.t01	Wine grape	cytosol	5.88	3.41
VIT_09s0054g00070.t01	Wine grape	extracellular	5.88	2.42
CDX95588	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB50246	ProteinID:CCB50246.1	UniProt:F6HDF1	EMBL:FN595740	GO:GO:0000463
GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327
PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_ferredoxin-like	SUPFAM:SSF55129	UniParc:UPI0002107F2C	ArrayExpress:VIT_00s2761g00010
EnsemblPlantsGene:VIT_00s2761g00010	EnsemblPlants:VIT_00s2761g00010.t01	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:42898534..42898783

Molecular Weight (calculated)

6051.8 Da

IEP (calculated)

11.364

GRAVY (calculated)

-0.186

Length

51 amino acids

Sequence
(BLAST)

1: MEPIQLKHEA KLKGGFYVDP EVKLLFIIRI RGINAMHPKT RKILQLLRLR Q

Best Arabidopsis Sequence Match ( AT3G13580.1 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.