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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 5
  • golgi 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:golgi
extracellular: 28052459
msms PMID: 28052459 doi
A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr
Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX95588 Canola cytosol 18.0 100.0
Bra037665.1-P Field mustard cytosol 77.0 95.45
CDY17884 Canola cytosol, extracellular 77.0 95.45
AT2G44120.2 Thale cress cytosol 77.33 93.93
CDX83440 Canola cytosol, extracellular 75.33 93.0
OQU75637 Sorghum cytosol 16.67 92.59
CDY30456 Canola cytosol 78.33 91.44
CDX77810 Canola cytosol, extracellular 71.0 88.02
CDY17686 Canola cytosol 71.0 88.02
CDY40393 Canola cytosol 71.0 88.02
CDY25941 Canola cytosol 70.67 87.6
CDY37358 Canola cytosol 70.67 87.6
CDY41074 Canola cytosol 70.67 87.6
VIT_00s2761g00010.t01 Wine grape cytosol 14.33 84.31
PGSC0003DMT400075548 Potato cytosol 67.33 84.17
VIT_09s0054g00140.t01 Wine grape cytosol 51.67 83.33
KRH37351 Soybean endoplasmic reticulum 67.0 83.06
Solyc07g008370.2.1 Tomato cytosol, nucleus, plastid, unclear 66.67 82.64
PGSC0003DMT400051218 Potato cytosol 66.67 82.64
KRH44630 Soybean cytosol 66.67 82.3
KRH47287 Soybean nucleus 66.67 82.3
VIT_09s0054g00010.t01 Wine grape cytosol 66.67 81.3
PGSC0003DMT400053653 Potato cytosol 65.67 80.41
VIT_11s0052g00290.t01 Wine grape cytosol 65.67 80.41
VIT_00s1526g00010.t01 Wine grape cytosol 14.33 79.63
Os04t0605900-01 Rice plastid 63.33 77.87
TraesCS5A01G452400.1 Wheat nucleus 63.0 77.46
TraesCS5B01G461300.1 Wheat cytosol 63.0 77.46
TraesCS5D01G462800.1 Wheat cytosol, golgi 63.0 77.46
Os08t0234000-01 Rice nucleus 63.0 77.14
Zm00001d002395_P002 Maize cytosol, extracellular 62.67 77.05
HORVU5Hr1G108990.2 Barley cytosol 63.0 76.52
VIT_09s0054g00210.t01 Wine grape cytosol 38.0 76.51
HORVU2Hr1G078780.1 Barley cytosol 13.0 76.47
Zm00001d050193_P001 Maize cytosol, plasma membrane, plastid 62.33 76.33
OQU75620 Sorghum cytosol 62.33 76.33
KXG24783 Sorghum cytosol 62.33 76.33
TraesCS2A01G432600.1 Wheat cytosol, unclear 62.0 76.23
HORVU7Hr1G057320.1 Barley cytosol 11.67 76.09
KXG27062 Sorghum cytosol 59.33 76.07
Zm00001d026254_P001 Maize plastid 62.33 76.02
TraesCS2B01G453900.1 Wheat cytosol, golgi, unclear 61.67 75.82
VIT_09s0054g00060.t01 Wine grape cytosol 31.0 75.61
TraesCS2D01G430500.1 Wheat golgi 61.33 75.41
Zm00001d024373_P001 Maize cytosol 61.33 74.49
KRH12348 Soybean endoplasmic reticulum, nucleus 67.0 73.9
VIT_09s0054g00090.t01 Wine grape cytosol 33.0 73.33
HORVU7Hr1G120140.1 Barley extracellular, peroxisome 21.67 73.03
VIT_09s0054g00030.t01 Wine grape cytosol 37.0 73.03
Zm00001d030114_P001 Maize cytosol 60.33 71.83
HORVU6Hr1G079960.1 Barley cytosol, extracellular 22.0 68.04
CDY01953 Canola cytosol 31.67 66.43
Zm00001d041838_P003 Maize mitochondrion 27.33 65.6
HORVU2Hr1G100970.4 Barley mitochondrion 63.67 65.41
KRH25929 Soybean cytosol 18.33 63.22
VIT_00s2416g00010.t01 Wine grape cytosol 15.67 61.04
KXG27000 Sorghum plastid 55.0 58.93
OQU80131 Sorghum cytosol 64.67 58.43
VIT_09s0054g00190.t01 Wine grape cytosol 24.0 54.55
CDX79781 Canola extracellular 28.33 53.12
CDX79356 Canola cytosol 32.67 38.13
CDY53223 Canola cytosol 33.0 37.64
CDX67965 Canola cytosol 33.0 37.5
CDY66947 Canola cytosol 32.67 37.26
CDX67964 Canola cytosol 19.33 32.4
GSMUA_AchrUn_... Banana cytosol 7.67 29.11
HORVU5Hr1G109020.1 Barley extracellular 6.67 27.03
Protein Annotations
Gene3D:1.10.15.30MapMan:17.1.2.1.5Gene3D:3.30.1390.20GO:A0A078GDG3UniProt:A0A078GDG3EnsemblPlants:CDY23419
ProteinID:CDY23419ProteinID:CDY23419.1ncoils:CoilGO:GO:0005575GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00022028001InterPro:IPR023106InterPro:IPR036919InterPro:L30_ferredoxin-like_sfPFAM:PF00327PFAM:PF08079
ScanProsite:PS00634PANTHER:PTHR11524PANTHER:PTHR11524:SF16InterPro:Ribosomal_L30_CSInterPro:Ribosomal_L30_NInterPro:Ribosomal_L30_central_dom_arc
InterPro:Ribosomal_L30_ferredoxin-likeInterPro:Ribosomal_L7_eukInterPro:Ribosomal_L7_euk_arcSUPFAM:SSF55129TIGRFAMs:TIGR01310TMHMM:TMhelix
UniParc:UPI0004EF3578SEG:seg::::
Description
BnaC04g49470DBnaC04g49470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDG3]
Coordinates
chrLK032143:-:356139..360105
Molecular Weight (calculated)
34659.2 Da
IEP (calculated)
10.337
GRAVY (calculated)
-0.229
Length
300 amino acids
Sequence
(BLAST)
001: MGPYISLLLP LFLFFICLLI NGPLKEGYEL KTLNPFLLLL PLCAVPLSLR QYLPLKEEMA ESKVVVPESV LKKIKREEEW ALAKKQEAEA AKKKSVETRK
101: LIFKRAEQYA KEYAEKDNEL IRLKREAKLK GGFYVDPEAK LLFIIRIRGI NAIDPKTKKI LQLLRLRQIF NGVFLKVNKA TINMLRRVEP YVTYGYPNLK
201: TVKELIYKRG FGKLNHQRIA LTDNSIVSEG LGKHNIICVE DLIHEIMTVG PHFKEANNFL WPFQLKAPLG GLKKKRNHYV EGGDAGNREN FINELVRRMN
Best Arabidopsis Sequence Match ( AT2G44120.2 )
(BLAST)
001: MYVGEMAESK VVVPESVLKK IKRQEEWALA KKDEAVAAKK KSVEARKLIF KRAEQYAKEY AEKDNELIRL KREAKLKGGF YVDPEAKLLF IIRIRGINAI
101: DPKTKKILQL LRLRQIFNGV FLKVNKATVN MLRRVEPYVT YGYPNLKSVK ELIYKRGYGK LNHQRIALTD NSIVDQALGK HGIICVEDLI HEIMTVGPHF
201: KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN
Arabidopsis Description
Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.