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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 19621931
plastid: 21433289
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G01250.1 Os11t0171500-01 AT4G09570.1 19130088
AT2G01250.1 Os12t0169800-00 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0605900-01 Rice plastid 93.06 93.44
CDX95588 Canola cytosol 20.41 92.59
GSMUA_Achr11P... Banana cytosol 86.53 86.89
GSMUA_Achr4P05780_001 Banana cytosol 86.12 86.48
GSMUA_Achr10P... Banana cytosol 86.12 86.48
KRH44630 Soybean cytosol 80.0 80.66
KRH47287 Soybean nucleus 79.18 79.84
VIT_09s0054g00150.t01 Wine grape cytosol 28.57 79.55
KRH37351 Soybean endoplasmic reticulum 77.96 78.93
PGSC0003DMT400075548 Potato cytosol 76.73 78.33
Solyc07g008370.2.1 Tomato cytosol, nucleus, plastid, unclear 76.73 77.69
Bra004806.1-P Field mustard cytosol 76.73 77.69
PGSC0003DMT400051218 Potato cytosol 76.73 77.69
CDY17884 Canola cytosol, extracellular 76.73 77.69
PGSC0003DMT400053653 Potato cytosol 77.55 77.55
CDX83440 Canola cytosol, extracellular 76.73 77.37
AT2G01250.1 Thale cress cytosol 76.33 77.27
Bra037665.1-P Field mustard cytosol 75.92 76.86
Bra017461.1-P Field mustard cytosol 75.92 76.86
AT3G13580.3 Thale cress cytosol 76.33 76.64
Bra000341.1-P Field mustard cytosol 61.22 76.53
CDY17686 Canola cytosol 75.51 76.45
CDY25941 Canola cytosol 75.51 76.45
CDX77810 Canola cytosol, extracellular 75.51 76.45
CDY40393 Canola cytosol 75.51 76.45
CDY41074 Canola cytosol 75.51 76.45
Bra014334.1-P Field mustard cytosol 75.51 76.45
CDY37358 Canola cytosol 75.1 76.03
Bra024895.1-P Field mustard cytosol 75.1 76.03
AT2G44120.2 Thale cress cytosol 76.33 75.71
CDY30456 Canola cytosol 76.73 73.15
GSMUA_Achr4P12660_001 Banana cytosol 84.9 71.72
KRH12348 Soybean endoplasmic reticulum, nucleus 78.78 70.96
KRH25929 Soybean cytosol 22.86 64.37
CDY23419 Canola extracellular 77.14 63.0
VIT_09s0054g00070.t01 Wine grape extracellular 27.76 54.84
CDY01953 Canola cytosol 31.84 54.55
Os08t0542100-01 Rice nucleus 44.9 40.0
CDX79781 Canola extracellular 24.9 38.12
Protein Annotations
Gene3D:1.10.15.30MapMan:17.1.2.1.5Gene3D:3.30.1390.20EntrezGene:4336914EntrezGene:4345009EMBL:AK073472
EMBL:AK102873ProteinID:BAD03800.1ProteinID:BAF15711.1ProteinID:BAF23224.1ProteinID:BAS90886.1ProteinID:BAT04444.1
ncoils:CoilProteinID:EEE61632.1GO:GO:0000463GO:GO:0002181GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022625
InterPro:IPR023106InterPro:IPR036919InterPro:L30_ferredoxin-like_sfEnsemblPlantsGene:Os08g0234000EnsemblPlants:Os08t0234000-01PFAM:PF00327
PFAM:PF08079ScanProsite:PS00634PANTHER:PTHR11524PANTHER:PTHR11524:SF16UniProt:Q6YYR2InterPro:Ribosomal_L30_CS
InterPro:Ribosomal_L30_NInterPro:Ribosomal_L30_central_dom_arcInterPro:Ribosomal_L30_ferredoxin-likeInterPro:Ribosomal_L7_eukInterPro:Ribosomal_L7_euk_arcSUPFAM:SSF55129
TIGRFAMs:TIGR01310UniParc:UPI00002261B8RefSeq:XP_015637188.1RefSeq:XP_015650122.1SEG:seg:
Description
Similar to 60S ribosomal protein L7-2. (Os08t0234000-01);Similar to 60S ribosomal protein L7-2. (Os08t0234000-02)
Coordinates
chr8:+:8153389..8155815
Molecular Weight (calculated)
28455.1 Da
IEP (calculated)
10.699
GRAVY (calculated)
-0.572
Length
245 amino acids
Sequence
(BLAST)
001: MAAEVAKAAV VPESVLKKRK REEQWAADRK EKALAEKKKA VESRKLIFAR AKQYAQEYDA QEKELVQLKR EARMKGGFYV SPEAKLLFVV RIRGINAMHP
101: KTRKILQLLR LRQIFNGVFL KVNKATINML RRVEPYVAYG YPNLKSVREL IYKRGYGKLN KQRIPLQNNK VIEEGLGKHD IICIEDLVHE IMTVGPHFKE
201: ANNFLWPFKL KAPLGGLKKK RNHYVEGGDA GNREDYINEL IRRMN
Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)
001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
Arabidopsis Description
RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.