Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 79.66 | 94.67 |
| GSMUA_Achr4P05780_001 | Banana | cytosol | 78.97 | 93.85 |
| GSMUA_Achr10P... | Banana | cytosol | 78.62 | 93.44 |
| Os08t0234000-01 | Rice | nucleus | 71.72 | 84.9 |
| Os04t0605900-01 | Rice | plastid | 71.03 | 84.43 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 14.83 | 84.31 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 70.0 | 83.2 |
| OQU75620 | Sorghum | cytosol | 69.66 | 82.45 |
| KXG24783 | Sorghum | cytosol | 69.66 | 82.45 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 69.31 | 82.04 |
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 68.97 | 81.97 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 68.62 | 81.56 |
| Zm00001d026254_P001 | Maize | plastid | 68.97 | 81.3 |
| Zm00001d024373_P001 | Maize | cytosol | 68.97 | 80.97 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 68.97 | 80.97 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 67.93 | 80.74 |
| TraesCS5B01G461300.1 | Wheat | cytosol | 67.93 | 80.74 |
| TraesCS5A01G452400.1 | Wheat | nucleus | 67.93 | 80.74 |
| TraesCS2D01G430500.1 | Wheat | golgi | 67.59 | 80.33 |
| KXG27062 | Sorghum | cytosol | 64.48 | 79.91 |
| GSMUA_Achr9P22960_001 | Banana | cytosol | 66.21 | 77.73 |
| Zm00001d030114_P001 | Maize | cytosol | 67.24 | 77.38 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 23.45 | 77.27 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 12.07 | 76.09 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 23.1 | 75.28 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 23.79 | 71.13 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 70.34 | 69.86 |
| Zm00001d041838_P003 | Maize | mitochondrion | 29.66 | 68.8 |
| KXG27000 | Sorghum | plastid | 61.38 | 63.57 |
| OQU80131 | Sorghum | cytosol | 70.69 | 61.75 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 36.55 | 59.55 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 23.79 | 55.65 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.69 | 39.24 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 6.21 | 24.32 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | ncoils:Coil | EnsemblPlantsGene:GSMUA_Achr4G12660_001 | EnsemblPlants:GSMUA_Achr4P12660_001 |
| EnsemblPlants:GSMUA_Achr4T12660_001 | InterPro:IPR023106 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | UniProt:M0SND1 | PFAM:PF00327 |
| PFAM:PF08079 | ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N |
| InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 |
| UniParc:UPI000296EFB3 | SEG:seg | : | : | : | : |
Description
60S ribosomal protein L7-2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12660_001]
Coordinates
chr4:+:9380896..9382767
Molecular Weight (calculated)
33398.1 Da
IEP (calculated)
10.678
GRAVY (calculated)
-0.502
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MIESFNLIFD KFLVLSNLNL PAADALPPAS IPSSDSHSSE LRGVSGMATE EAKAVVPESV LKKRKREEQW AVAKKQAVDA KKKKDRTNRK LIFTRAQQYA
101: KEYESQEKEL IRLKREARMK GGFYVSPEAK LLFIIRIRGI NAMHPKTRKI LQLLRLRQIF NGVFLKVNKA TMNMLQRVEP YVTYGYPNLK SVRELIYKRG
201: YGKLNKQRIP LTDNAIIEQG LGKHGIICME DLVHEIMTVG THFKEANNFL WPFKLKAPLG GLKKKRRHYV EGGDAGNRED YINELIRRMN
101: KEYESQEKEL IRLKREARMK GGFYVSPEAK LLFIIRIRGI NAMHPKTRKI LQLLRLRQIF NGVFLKVNKA TMNMLQRVEP YVTYGYPNLK SVRELIYKRG
201: YGKLNKQRIP LTDNAIIEQG LGKHGIICME DLVHEIMTVG THFKEANNFL WPFKLKAPLG GLKKKRRHYV EGGDAGNRED YINELIRRMN
001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
Arabidopsis Description
RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.