Factsheet for TraesCS2D01G430500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G432600.1	Wheat	cytosol, unclear	95.08	95.08
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	94.67	94.67
CDX95588	Canola	cytosol	20.49	92.59
TraesCS5D01G462800.1	Wheat	cytosol, golgi	92.21	92.21
HORVU2Hr1G078780.1	Barley	cytosol	19.26	92.16
Os04t0605900-01	Rice	plastid	88.52	88.52
Zm00001d002395_P002	Maize	cytosol, extracellular	87.3	87.3
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	31.56	86.52
KXG27062	Sorghum	cytosol	82.38	85.9
Zm00001d026254_P001	Maize	plastid	86.48	85.77
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	86.07	85.71
KXG24783	Sorghum	cytosol	85.25	84.9
OQU75620	Sorghum	cytosol	85.25	84.9
Zm00001d024373_P001	Maize	cytosol	85.66	84.62
GSMUA_Achr11P...	Banana	cytosol	81.56	81.56
GSMUA_Achr4P05780_001	Banana	cytosol	81.15	81.15
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	31.97	80.41
GSMUA_Achr10P...	Banana	cytosol	80.33	80.33
Zm00001d030114_P001	Maize	cytosol	82.79	80.16
HORVU2Hr1G100970.4	Barley	mitochondrion	94.26	78.77
VIT_09s0054g00150.t01	Wine grape	cytosol	27.87	77.27
PGSC0003DMT400075548	Potato	cytosol	75.82	77.08
Bra004806.1-P	Field mustard	cytosol	76.23	76.86
AT2G01250.1	Thale cress	cytosol	76.23	76.86
CDY17884	Canola	cytosol, extracellular	76.23	76.86
KRH44630	Soybean	cytosol	75.82	76.13
KRH47287	Soybean	nucleus	75.82	76.13
Bra017461.1-P	Field mustard	cytosol	75.41	76.03
CDY37358	Canola	cytosol	75.41	76.03
CDX77810	Canola	cytosol, extracellular	75.0	75.62
Bra014334.1-P	Field mustard	cytosol	75.0	75.62
PGSC0003DMT400051218	Potato	cytosol	75.0	75.62
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	75.0	75.62
CDY25941	Canola	cytosol	75.0	75.62
CDY17686	Canola	cytosol	75.0	75.62
CDY41074	Canola	cytosol	75.0	75.62
CDY40393	Canola	cytosol	75.0	75.62
Bra037665.1-P	Field mustard	cytosol	74.59	75.21
Bra024895.1-P	Field mustard	cytosol	74.59	75.21
CDX83440	Canola	cytosol, extracellular	74.59	74.9
KRH37351	Soybean	endoplasmic reticulum	74.18	74.79
PGSC0003DMT400053653	Potato	cytosol	75.0	74.69
AT3G13580.3	Thale cress	cytosol	73.77	73.77
Bra000341.1-P	Field mustard	cytosol	59.02	73.47
AT2G44120.2	Thale cress	cytosol	73.77	72.87
CDY30456	Canola	cytosol	75.41	71.6
GSMUA_Achr4P12660_001	Banana	cytosol	80.33	67.59
KRH12348	Soybean	endoplasmic reticulum, nucleus	73.77	66.18
KXG27000	Sorghum	plastid	72.95	63.57
KRH25929	Soybean	cytosol	22.54	63.22
OQU80131	Sorghum	cytosol	85.25	62.65
CDY23419	Canola	extracellular	75.41	61.33
VIT_09s0054g00070.t01	Wine grape	extracellular	27.05	53.23
CDY01953	Canola	cytosol	31.15	53.15
TraesCS7D01G268700.1	Wheat	cytosol	41.39	40.73
CDX79781	Canola	extracellular	23.36	35.62
TraesCS1D01G134300.1	Wheat	cytosol	26.64	26.97

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	EnsemblPlantsGene:TraesCS2D01G430500	EnsemblPlants:TraesCS2D01G430500.1	TIGR:cd01657	SEG:seg

Description

No Description!

Coordinates

chr2D:-:543045915..543047832

Molecular Weight (calculated)

28108.7 Da

IEP (calculated)

10.684

GRAVY (calculated)

-0.489

Length

244 amino acids

Sequence
(BLAST)

001: MASEAAKVAV PEKVILKRRR EEVWAAEKKQ KVAAEKIKAA ENTKVIYARA EQYAGEYEAQ DKELVQLKRE ARMKGGFYVS PEAKLLFVVR IRGINAMHPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLANNKV IEEGLGKHNI ICIEDLVHEI LTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINQLV RRMN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.