Factsheet for TraesCS5D01G462800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G461300.1	Wheat	cytosol	99.18	99.18
TraesCS5A01G452400.1	Wheat	nucleus	99.18	99.18
HORVU5Hr1G108990.2	Barley	cytosol	97.54	96.36
CDX95588	Canola	cytosol	20.49	92.59
TraesCS2D01G430500.1	Wheat	golgi	92.21	92.21
Os04t0605900-01	Rice	plastid	90.98	90.98
Zm00001d002395_P002	Maize	cytosol, extracellular	89.75	89.75
Zm00001d026254_P001	Maize	plastid	89.75	89.02
KXG27062	Sorghum	cytosol	84.43	88.03
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	88.11	87.76
OQU75620	Sorghum	cytosol	88.11	87.76
KXG24783	Sorghum	cytosol	88.11	87.76
Zm00001d024373_P001	Maize	cytosol	87.7	86.64
Zm00001d030114_P001	Maize	cytosol	86.07	83.33
GSMUA_Achr4P05780_001	Banana	cytosol	83.2	83.2
GSMUA_Achr11P...	Banana	cytosol	81.97	81.97
GSMUA_Achr10P...	Banana	cytosol	81.15	81.15
PGSC0003DMT400075548	Potato	cytosol	77.46	78.75
KRH44630	Soybean	cytosol	77.87	78.19
CDY17884	Canola	cytosol, extracellular	77.46	78.1
Bra004806.1-P	Field mustard	cytosol	77.46	78.1
KRH47287	Soybean	nucleus	77.46	77.78
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	77.05	77.69
PGSC0003DMT400051218	Potato	cytosol	77.05	77.69
VIT_09s0054g00150.t01	Wine grape	cytosol	27.87	77.27
PGSC0003DMT400053653	Potato	cytosol	77.46	77.14
AT2G01250.1	Thale cress	cytosol	76.23	76.86
Bra037665.1-P	Field mustard	cytosol	76.23	76.86
Bra017461.1-P	Field mustard	cytosol	76.23	76.86
CDX83440	Canola	cytosol, extracellular	76.23	76.54
CDY41074	Canola	cytosol	75.82	76.45
CDY40393	Canola	cytosol	75.82	76.45
CDY25941	Canola	cytosol	75.82	76.45
CDY17686	Canola	cytosol	75.82	76.45
CDX77810	Canola	cytosol, extracellular	75.82	76.45
Bra014334.1-P	Field mustard	cytosol	75.82	76.45
KRH37351	Soybean	endoplasmic reticulum	75.41	76.03
CDY37358	Canola	cytosol	75.41	76.03
Bra024895.1-P	Field mustard	cytosol	75.41	76.03
AT2G44120.2	Thale cress	cytosol	76.64	75.71
Bra000341.1-P	Field mustard	cytosol	60.66	75.51
AT3G13580.3	Thale cress	cytosol	75.41	75.41
CDY30456	Canola	cytosol	77.05	73.15
GSMUA_Achr4P12660_001	Banana	cytosol	80.74	67.93
KRH12348	Soybean	endoplasmic reticulum, nucleus	75.41	67.65
KXG27000	Sorghum	plastid	75.41	65.71
OQU80131	Sorghum	cytosol	88.11	64.76
KRH25929	Soybean	cytosol	22.95	64.37
CDY23419	Canola	extracellular	77.46	63.0
CDY01953	Canola	cytosol	31.56	53.85
VIT_09s0054g00070.t01	Wine grape	extracellular	27.05	53.23
TraesCS7D01G268700.1	Wheat	cytosol	40.98	40.32
CDX79781	Canola	extracellular	24.18	36.88
TraesCS1D01G134300.1	Wheat	cytosol	26.23	26.56

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	EnsemblPlantsGene:TraesCS5D01G462800	EnsemblPlants:TraesCS5D01G462800.1	TIGR:cd01657	SEG:seg

Description

No Description!

Coordinates

chr5D:-:506243643..506245757

Molecular Weight (calculated)

28306.9 Da

IEP (calculated)

10.646

GRAVY (calculated)

-0.557

Length

244 amino acids

Sequence
(BLAST)

001: MSSEAAKMVV PESVLLKRKR EELWAAEKKT KAVEEKKKSS ENIKVIYARA KQYAEEYDAQ DKELVQLKRE ARMKGGFYVS PEAKLLFVVR IRGINAMHPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLTNNKV IEEGLGKHNI ICIEDLVHEI LTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINQLV RRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.