Factsheet for Zm00001d030114_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026254_P001	Maize	plastid	93.25	95.53
Zm00001d002395_P002	Maize	cytosol, extracellular	90.08	93.03
CDX95588	Canola	cytosol	19.84	92.59
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	86.9	89.39
Os04t0605900-01	Rice	plastid	86.51	89.34
Zm00001d024373_P001	Maize	cytosol	86.51	88.26
TraesCS5A01G452400.1	Wheat	nucleus	83.73	86.48
TraesCS5B01G461300.1	Wheat	cytosol	83.73	86.48
HORVU2Hr1G078780.1	Barley	cytosol	17.46	86.27
TraesCS5D01G462800.1	Wheat	cytosol, golgi	83.33	86.07
HORVU5Hr1G108990.2	Barley	cytosol	84.13	85.83
TraesCS2A01G432600.1	Wheat	cytosol, unclear	80.56	83.2
TraesCS2D01G430500.1	Wheat	golgi	80.16	82.79
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	80.16	82.79
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	28.97	82.02
GSMUA_Achr10P...	Banana	cytosol	78.17	80.74
GSMUA_Achr4P05780_001	Banana	cytosol	78.17	80.74
GSMUA_Achr11P...	Banana	cytosol	78.17	80.74
KRH47287	Soybean	nucleus	74.6	77.37
KRH44630	Soybean	cytosol	74.6	77.37
VIT_09s0054g00150.t01	Wine grape	cytosol	26.98	77.27
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	29.37	76.29
PGSC0003DMT400075548	Potato	cytosol	72.22	75.83
CDY17884	Canola	cytosol, extracellular	72.62	75.62
Bra004806.1-P	Field mustard	cytosol	72.62	75.62
Bra000341.1-P	Field mustard	cytosol	58.73	75.51
AT2G01250.1	Thale cress	cytosol	72.22	75.21
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	72.22	75.21
PGSC0003DMT400051218	Potato	cytosol	72.22	75.21
KRH37351	Soybean	endoplasmic reticulum	72.22	75.21
PGSC0003DMT400053653	Potato	cytosol	73.02	75.1
CDX83440	Canola	cytosol, extracellular	72.22	74.9
Bra037665.1-P	Field mustard	cytosol	71.83	74.79
Bra017461.1-P	Field mustard	cytosol	71.43	74.38
CDY41074	Canola	cytosol	71.43	74.38
CDY37358	Canola	cytosol	71.43	74.38
AT3G13580.3	Thale cress	cytosol	71.83	74.18
Bra014334.1-P	Field mustard	cytosol	71.03	73.97
CDY25941	Canola	cytosol	71.03	73.97
CDX77810	Canola	cytosol, extracellular	71.03	73.97
CDY17686	Canola	cytosol	71.03	73.97
CDY40393	Canola	cytosol	71.03	73.97
Bra024895.1-P	Field mustard	cytosol	70.24	73.14
AT2G44120.2	Thale cress	cytosol	71.03	72.47
CDY30456	Canola	cytosol	72.62	71.21
Zm00001d041838_P003	Maize	mitochondrion	34.52	69.6
HORVU2Hr1G100970.4	Barley	mitochondrion	80.56	69.52
KXG27000	Sorghum	plastid	76.98	69.29
KRH12348	Soybean	endoplasmic reticulum, nucleus	72.62	67.28
GSMUA_Achr4P12660_001	Banana	cytosol	77.38	67.24
CDY23419	Canola	extracellular	71.83	60.33
KRH25929	Soybean	cytosol	20.24	58.62
CDY01953	Canola	cytosol	30.95	54.55
VIT_09s0054g00070.t01	Wine grape	extracellular	26.59	54.03
CDX79781	Canola	extracellular	25.0	39.38
Zm00001d031703_P001	Maize	cytosol, plasma membrane	38.49	37.02
Zm00001d052719_P002	Maize	cytosol	37.7	36.26

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:103637734	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A1D6KA20	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	ProteinID:ONM00325.1	PFAM:PF00327	PFAM:PF08079	PANTHER:PTHR11524
PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0004DEBB7F	EnsemblPlantsGene:Zm00001d030114	EnsemblPlants:Zm00001d030114_P001	EnsemblPlants:Zm00001d030114_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L7-2

Coordinates

chr1:-:106840123..106842310

Molecular Weight (calculated)

29459.2 Da

IEP (calculated)

10.528

GRAVY (calculated)

-0.621

Length

252 amino acids

Sequence
(BLAST)

001: MQMSSEASKV AVPESVLRKR KREEQWATEK KEKALVKKKK SIESRKLIFT RAKQYAEEYD AQEKELVQLK REARLKGGFY VSPEAKLLFV VRIRGINAMH
101: PKTRKILQLL RLRQMCSLMY IFNGVFLKVN KATIDMLRRV DPYDAYGYPN LNSVRELIYK RGYGNLNKQR IPLSNNQVIE EGLDKQKIIC VEDLVHEIMT
201: VGPHFKEANN FLWPFKLKAP LGGLKKKRNH YVEGGDAGNR ENYINELIKR MN

Best Arabidopsis Sequence Match ( AT2G44120.1 )
(BLAST)

001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.