CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	EES09373	AT4G09570.1	19130088
AT2G01250.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75637	Sorghum	cytosol	18.93	98.15
CDX95588	Canola	cytosol	17.5	90.74
Zm00001d026254_P001	Maize	plastid	72.14	82.11
KXG27062	Sorghum	cytosol	67.86	81.2
OQU75620	Sorghum	cytosol	68.93	78.78
KXG24783	Sorghum	cytosol	68.93	78.78
Os04t0605900-01	Rice	plastid	68.57	78.69
Zm00001d030114_P001	Maize	cytosol	69.29	76.98
TraesCS5A01G452400.1	Wheat	nucleus	66.07	75.82
TraesCS5B01G461300.1	Wheat	cytosol	66.07	75.82
TraesCS5D01G462800.1	Wheat	cytosol, golgi	65.71	75.41
HORVU5Hr1G108990.2	Barley	cytosol	66.07	74.9
TraesCS2D01G430500.1	Wheat	golgi	63.57	72.95
TraesCS2A01G432600.1	Wheat	cytosol, unclear	63.57	72.95
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	63.21	72.54
Bra000341.1-P	Field mustard	cytosol	50.0	71.43
GSMUA_Achr4P05780_001	Banana	cytosol	62.14	71.31
GSMUA_Achr11P...	Banana	cytosol	62.14	71.31
GSMUA_Achr10P...	Banana	cytosol	62.14	71.31
KRH44630	Soybean	cytosol	59.64	68.72
KRH47287	Soybean	nucleus	59.29	68.31
PGSC0003DMT400075548	Potato	cytosol	58.21	67.92
PGSC0003DMT400053653	Potato	cytosol	59.29	67.76
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	58.21	67.36
PGSC0003DMT400051218	Potato	cytosol	58.21	67.36
Bra004806.1-P	Field mustard	cytosol	57.86	66.94
CDY17884	Canola	cytosol, extracellular	57.86	66.94
CDX83440	Canola	cytosol, extracellular	57.86	66.67
KRH37351	Soybean	endoplasmic reticulum	57.5	66.53
AT2G01250.1	Thale cress	cytosol	57.5	66.53
Bra037665.1-P	Field mustard	cytosol	57.5	66.53
CDY37358	Canola	cytosol	57.14	66.12
Bra017461.1-P	Field mustard	cytosol	57.14	66.12
CDY41074	Canola	cytosol	56.79	65.7
CDY40393	Canola	cytosol	56.79	65.7
CDY25941	Canola	cytosol	56.79	65.7
CDY17686	Canola	cytosol	56.79	65.7
CDX77810	Canola	cytosol, extracellular	56.79	65.7
Bra014334.1-P	Field mustard	cytosol	56.79	65.7
AT3G13580.3	Thale cress	cytosol	56.79	65.16
CDY30456	Canola	cytosol	59.64	64.98
Bra024895.1-P	Field mustard	cytosol	56.07	64.88
AT2G44120.2	Thale cress	cytosol	57.14	64.78
KRH25929	Soybean	cytosol	19.64	63.22
HORVU2Hr1G100970.4	Barley	mitochondrion	64.64	61.99
GSMUA_Achr4P12660_001	Banana	cytosol	63.57	61.38
OQU80131	Sorghum	cytosol	72.5	61.14
KRH12348	Soybean	endoplasmic reticulum, nucleus	58.57	60.29
CDY23419	Canola	extracellular	58.93	55.0
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	16.07	50.56
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	16.79	48.45
HORVU2Hr1G078780.1	Barley	cytosol	7.14	39.22
CDY01953	Canola	cytosol	19.64	38.46
CDX79781	Canola	extracellular	20.0	35.0
EES15262	Sorghum	cytosol	31.43	33.59

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A1B6PMX3	ncoils:Coil	GO:GO:0000139
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016740	GO:GO:0016757	GO:GO:0071555	InterPro:IPR023106	InterPro:IPR036919	EnsemblPlants:KXG27000
ProteinID:KXG27000	ProteinID:KXG27000.2	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	PANTHER:PTHR11524
PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk_arc	EnsemblPlantsGene:SORBI_3006G206500
SUPFAM:SSF55129	UniParc:UPI000B8BA230	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:55614098..55618157

Molecular Weight (calculated)

31669.7 Da

IEP (calculated)

10.673

GRAVY (calculated)

-0.604

Length

280 amino acids

Sequence
(BLAST)

001: MSPPAHQSTT TRRGPKLFSA VGSPPQTLAT KPLLHNQPFP LPPPPASTSA LHSPHVPLSY PARPGKMSSE VAKVAVPESV LRKQKREEQW AVEKKEKALA
101: EKKKSIKSRK LIFTRAKQYA KEYDAQEKEL VQLKREARLK GGFYVSPEIF NGVFLKVNKA TINMLRRVEP YAAYGYPNLK SVRELIYKMG YGKLNKQRIP
201: LSNNQVIEAG LGKHNIICIE DLVHEIMIVG PHFKEANNFL WPFKLKAPLG GLKKKRNHYV EGGDAGNREN YINELIKRMN

Best Arabidopsis Sequence Match ( AT2G44120.1 )
(BLAST)

001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.