Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | EES09373 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | EES16732 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95588 | Canola | cytosol | 92.59 | 92.59 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 98.15 | 60.23 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 98.15 | 42.74 |
| Bra000341.1-P | Field mustard | cytosol | 92.59 | 25.51 |
| KXG24783 | Sorghum | cytosol | 100.0 | 22.04 |
| OQU75620 | Sorghum | cytosol | 100.0 | 22.04 |
| KRH47287 | Soybean | nucleus | 96.3 | 21.4 |
| KRH44630 | Soybean | cytosol | 96.3 | 21.4 |
| KXG27062 | Sorghum | cytosol | 92.59 | 21.37 |
| PGSC0003DMT400051218 | Potato | cytosol | 92.59 | 20.66 |
| CDY37358 | Canola | cytosol | 92.59 | 20.66 |
| KRH37351 | Soybean | endoplasmic reticulum | 92.59 | 20.66 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 92.59 | 20.66 |
| CDY41074 | Canola | cytosol | 92.59 | 20.66 |
| CDY40393 | Canola | cytosol | 92.59 | 20.66 |
| AT2G01250.1 | Thale cress | cytosol | 92.59 | 20.66 |
| CDY25941 | Canola | cytosol | 92.59 | 20.66 |
| Bra004806.1-P | Field mustard | cytosol | 92.59 | 20.66 |
| CDY17884 | Canola | cytosol, extracellular | 92.59 | 20.66 |
| CDY17686 | Canola | cytosol | 92.59 | 20.66 |
| Bra014334.1-P | Field mustard | cytosol | 92.59 | 20.66 |
| Bra017461.1-P | Field mustard | cytosol | 92.59 | 20.66 |
| Bra024895.1-P | Field mustard | cytosol | 92.59 | 20.66 |
| Bra037665.1-P | Field mustard | cytosol | 92.59 | 20.66 |
| CDX77810 | Canola | cytosol, extracellular | 92.59 | 20.66 |
| PGSC0003DMT400075548 | Potato | cytosol | 90.74 | 20.42 |
| PGSC0003DMT400053653 | Potato | cytosol | 92.59 | 20.41 |
| AT2G44120.2 | Thale cress | cytosol | 92.59 | 20.24 |
| CDX83440 | Canola | cytosol, extracellular | 90.74 | 20.16 |
| AT3G13580.3 | Thale cress | cytosol | 90.74 | 20.08 |
| CDY30456 | Canola | cytosol | 92.59 | 19.46 |
| KXG27000 | Sorghum | plastid | 98.15 | 18.93 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 94.44 | 18.75 |
| CDY23419 | Canola | extracellular | 92.59 | 16.67 |
| OQU80131 | Sorghum | cytosol | 100.0 | 16.27 |
| EES15262 | Sorghum | cytosol | 55.56 | 11.45 |
| KRH25929 | Soybean | cytosol | 7.41 | 4.6 |
| CDY01953 | Canola | cytosol | 5.56 | 2.1 |
| CDX79781 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.1390.20 | MapMan:35.1 | UniProt:C6JSA6 | ProteinID:EES20366.1 | GO:GO:0000463 | GO:GO:0002181 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR036919 | ProteinID:KXG18749.1 | InterPro:L30_ferredoxin-like_sf | EnsemblPlants:OQU75637 |
| ProteinID:OQU75637 | ProteinID:OQU75637.1 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | EnsemblPlantsGene:SORBI_3K020400 | SUPFAM:SSF55129 |
| unigene:Sbi.18351 | UniParc:UPI0001AFF765 | RefSeq:XP_002489056.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chrsuper_199:-:7739..8247
Molecular Weight (calculated)
6243.6 Da
IEP (calculated)
10.546
GRAVY (calculated)
-0.863
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MTVGPHFKEA NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINELI KRMN
001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
Arabidopsis Description
Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.