Factsheet for Zm00001d031703_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15262	Sorghum	cytosol	91.98	91.98
Zm00001d052719_P002	Maize	cytosol	90.84	90.84
TraesCS7B01G166400.1	Wheat	cytosol	68.32	72.18
TraesCS7A01G266000.1	Wheat	nucleus	67.94	71.77
TraesCS7D01G268700.1	Wheat	cytosol	67.56	71.37
Os08t0542100-01	Rice	nucleus	68.7	65.45
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	43.13	63.48
Solyc06g068400.2.1	Tomato	cytosol, nucleus	48.09	51.22
PGSC0003DMT400073431	Potato	cytosol	47.71	50.81
TraesCS1D01G134300.1	Wheat	cytosol	44.66	48.55
PGSC0003DMT400036807	Potato	cytosol	44.66	47.56
VIT_09s0070g00130.t01	Wine grape	cytosol	44.27	47.15
AT1G80750.1	Thale cress	cytosol	42.37	44.94
KRG94901	Soybean	nucleus	40.46	44.92
CDX79356	Canola	cytosol	43.89	44.75
KRH06635	Soybean	cytosol	40.08	44.49
CDY53223	Canola	cytosol	41.98	41.83
CDY66947	Canola	cytosol	41.98	41.83
Bra003583.1-P	Field mustard	cytosol	41.98	41.67
CDX67965	Canola	cytosol	41.98	41.67
Zm00001d041838_P003	Maize	mitochondrion	19.85	41.6
Bra008443.1-P	Field mustard	cytosol	41.6	41.44
Zm00001d002395_P002	Maize	cytosol, extracellular	38.55	41.39
Zm00001d026254_P001	Maize	plastid	38.17	40.65
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	37.79	40.41
Zm00001d024373_P001	Maize	cytosol	37.79	40.08
Solyc03g117060.2.1	Tomato	nucleus	44.66	39.0
Zm00001d030114_P001	Maize	cytosol	37.02	38.49
CDX67964	Canola	cytosol	22.52	32.96

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100192863	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:B4FCX1	EMBL:BT034959
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	ProteinID:ONM03518.1	PFAM:PF00327	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11
InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	UniParc:UPI00017B64BF	EnsemblPlantsGene:Zm00001d031703
EnsemblPlants:Zm00001d031703_P001	EnsemblPlants:Zm00001d031703_T001	SEG:seg	:	:	:

Description

60S ribosomal protein L7-1

Coordinates

chr1:+:198955378..198957377

Molecular Weight (calculated)

30336.1 Da

IEP (calculated)

10.794

GRAVY (calculated)

-0.549

Length

262 amino acids

Sequence
(BLAST)

001: MGADGEEASR IVVPMAVEGT SEQLAFVEES KLQKRKENAD WAVRNRERRA VKRQRIRDEH KVTVRRPEDF VAAFRNKERD FLRMRTRLKV RKQPPAEALS
101: SKLVFAIRIP GSVDLHPHIR KVLRKLRLTT VLTGVFLRAT ELTLKRLLVV EPFVTYGFPN LKNVKELIYK KGRGFFDKEP FPLTSNDLIE KALGDHGIIC
201: LEDVVHEIAT VGPHFREASR FLMPFRLKCP ERRLQMKRKP YKDGGDSGDR GDKINELIEK LN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.