Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G268700.1 | Wheat | cytosol | 69.29 | 67.34 |
| TraesCS7A01G266000.1 | Wheat | nucleus | 68.88 | 66.94 |
| Os08t0542100-01 | Rice | nucleus | 56.43 | 49.45 |
| Zm00001d031703_P001 | Maize | cytosol, plasma membrane | 48.55 | 44.66 |
| EES15262 | Sorghum | cytosol | 48.55 | 44.66 |
| Zm00001d052719_P002 | Maize | cytosol | 47.3 | 43.51 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 26.97 | 36.52 |
| VIT_09s0070g00130.t01 | Wine grape | cytosol | 36.93 | 36.18 |
| Solyc06g068400.2.1 | Tomato | cytosol, nucleus | 36.51 | 35.77 |
| AT1G80750.1 | Thale cress | cytosol | 36.51 | 35.63 |
| PGSC0003DMT400073431 | Potato | cytosol | 36.1 | 35.37 |
| PGSC0003DMT400036807 | Potato | cytosol | 35.27 | 34.55 |
| KRH06635 | Soybean | cytosol | 33.2 | 33.9 |
| CDX79356 | Canola | cytosol | 34.85 | 32.68 |
| KRG94901 | Soybean | nucleus | 31.54 | 32.2 |
| CDY66947 | Canola | cytosol | 33.61 | 30.8 |
| CDX67965 | Canola | cytosol | 33.61 | 30.68 |
| Bra003583.1-P | Field mustard | cytosol | 33.61 | 30.68 |
| Bra008443.1-P | Field mustard | cytosol | 33.2 | 30.42 |
| CDY53223 | Canola | cytosol | 33.2 | 30.42 |
| CDX67964 | Canola | cytosol | 22.41 | 30.17 |
| Solyc03g117060.2.1 | Tomato | nucleus | 35.27 | 28.33 |
| TraesCS2D01G430500.1 | Wheat | golgi | 26.97 | 26.64 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 26.56 | 26.23 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G134300.1 | EnsemblPlantsGene:TraesCS1D01G134300 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_ferredoxin-like |
| PANTHER:PTHR11524 | PANTHER:PTHR11524:SF11 | PFAM:PF00327 | PFAM:PF08079 | SUPFAM:SSF55129 | TMHMM:TMhelix |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:168798764..168800230
Molecular Weight (calculated)
28124.9 Da
IEP (calculated)
10.773
GRAVY (calculated)
-0.393
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEEGTQQL PFVRETVLKK RKDNEEWATK NRERKAAKMQ HRRHDAKCAI KHPEVFVKEF RNKELDFLRM RTRLKVRNLR PAEAIDAKLL FAIHIPALLT
101: CTRKIGKILA RLQLKKVLTG VFLKATEANL KRLATVGPFV TYGFPNLKNV KELIYKKGRG YFDKEPFPLT SNDLIEKTYK NEEVQPYLCE GSVSVPVAGI
201: RRLQKRKSFK KNNTPWVGVC LLLELIFVFF VQCFQVHRKV L
101: CTRKIGKILA RLQLKKVLTG VFLKATEANL KRLATVGPFV TYGFPNLKNV KELIYKKGRG YFDKEPFPLT SNDLIEKTYK NEEVQPYLCE GSVSVPVAGI
201: RRLQKRKSFK KNNTPWVGVC LLLELIFVFF VQCFQVHRKV L
001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN
Arabidopsis Description
RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.