Factsheet for Solyc06g068400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073431	Potato	cytosol	97.97	97.97
Solyc03g117060.2.1	Tomato	nucleus	85.77	70.33
VIT_09s0070g00130.t01	Wine grape	cytosol	65.85	65.85
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	46.75	64.61
KRH06635	Soybean	cytosol	56.5	58.9
KRG94901	Soybean	nucleus	55.69	58.05
AT1G80750.1	Thale cress	cytosol	52.85	52.63
CDX79356	Canola	cytosol	54.47	52.14
TraesCS7B01G166400.1	Wheat	cytosol	52.44	52.02
TraesCS7A01G266000.1	Wheat	nucleus	52.03	51.61
TraesCS7D01G268700.1	Wheat	cytosol	51.22	50.81
CDY66947	Canola	cytosol	54.06	50.57
Bra008443.1-P	Field mustard	cytosol	53.66	50.19
CDY53223	Canola	cytosol	53.25	49.81
Bra003583.1-P	Field mustard	cytosol	52.85	49.24
CDX67965	Canola	cytosol	52.85	49.24
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	48.37	49.17
EES15262	Sorghum	cytosol	52.03	48.85
Os08t0542100-01	Rice	nucleus	54.47	48.73
Zm00001d031703_P001	Maize	cytosol, plasma membrane	51.22	48.09
Zm00001d052719_P002	Maize	cytosol	51.22	48.09
CDX67964	Canola	cytosol	30.08	41.34
TraesCS1D01G134300.1	Wheat	cytosol	35.77	36.51

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	GO:GO:0000463	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	UniProt:K4C815	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327
PFAM:PF08079	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like
InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	EnsemblPlantsGene:Solyc06g068400.2	EnsemblPlants:Solyc06g068400.2.1	TIGRFAMs:TIGR01310
UniParc:UPI000276639E	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:42374244..42377452

Molecular Weight (calculated)

28516.8 Da

IEP (calculated)

10.489

GRAVY (calculated)

-0.688

Length

246 amino acids

Sequence
(BLAST)

001: MADEVPQPLN YIPEVILKKR KNNEEWAIRR KLQLEQKVRK LKSDSFVIKK PEQFIREYRD KEMDLVQMKQ RGKRRDKGAL TTSESKLLFV IRIGGKSDMH
101: PRTRKALYSL RLRKIFSGVF VKANERTVEI LQKVEPFVTY GYPNLKSVKD LIYKKGSGKF DNQRVPLTSN DIVEQTLGQY GIICLEDVVR EIASVGPHFK
201: EVTSFLCPFA LTKPEKALQG KKKRYNDGGD SGNRQDHINE LISKMN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.