Factsheet for PGSC0003DMT400073431

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068400.2.1	Tomato	cytosol, nucleus	97.97	97.97
PGSC0003DMT400036807	Potato	cytosol	86.59	86.59
VIT_09s0070g00130.t01	Wine grape	cytosol	66.26	66.26
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	47.15	65.17
KRH06635	Soybean	cytosol	56.5	58.9
KRG94901	Soybean	nucleus	55.69	58.05
AT1G80750.1	Thale cress	cytosol	53.25	53.04
CDX79356	Canola	cytosol	54.88	52.53
TraesCS7B01G166400.1	Wheat	cytosol	52.03	51.61
TraesCS7A01G266000.1	Wheat	nucleus	51.63	51.21
CDY66947	Canola	cytosol	54.47	50.95
Bra008443.1-P	Field mustard	cytosol	54.06	50.57
TraesCS7D01G268700.1	Wheat	cytosol	50.81	50.4
CDY53223	Canola	cytosol	53.66	50.19
CDX67965	Canola	cytosol	53.25	49.62
Bra003583.1-P	Field mustard	cytosol	53.25	49.62
PGSC0003DMT400051218	Potato	cytosol	48.37	49.17
Os08t0542100-01	Rice	nucleus	54.88	49.09
EES15262	Sorghum	cytosol	52.03	48.85
PGSC0003DMT400075548	Potato	cytosol	46.75	47.92
Zm00001d031703_P001	Maize	cytosol, plasma membrane	50.81	47.71
Zm00001d052719_P002	Maize	cytosol	50.81	47.71
PGSC0003DMT400053653	Potato	cytosol	47.15	47.35
CDX67964	Canola	cytosol	30.08	41.34
TraesCS1D01G134300.1	Wheat	cytosol	35.37	36.1

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ProteinID:ABC01902	ProteinID:ABC01902.1	EMBL:DQ294270
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	UniProt:M1CRZ7	PFAM:PF00327	PFAM:PF08079	EnsemblPlantsGene:PGSC0003DMG400028524
PGSC:PGSC0003DMG400028524	EnsemblPlants:PGSC0003DMT400073431	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc
InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI000296B957

Description

60S ribosomal protein L7 [Source:PGSC_GENE;Acc:PGSC0003DMG400028524]

Coordinates

chr6:+:49981299..49985900

Molecular Weight (calculated)

28425.7 Da

IEP (calculated)

10.489

GRAVY (calculated)

-0.660

Length

246 amino acids

Sequence
(BLAST)

001: MADEVPQPLN YIPEVILKKR KNNEEWAIRR KLQLEQKVRK LKSDSFVIKK PEQFIREYRD KEMDLVQMKQ RGKRRAKGAL TTSDSKLLFV IRIGGKSDMH
101: PRTRKALYSL RLRKIFSGVF VKANERTVEI LQKVEPFVTY GYPNLKSVKD LIYKKGSGKT DNQRVPLTSN DIVEQTLGQY GIICLEDVVR EIASVGPHFK
201: EVTSFLCPFA LIKPEKALQG KKKRYNDGGD SGNREDHINE LISKMN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.