Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
23198870
plasma membrane: 27341663 |
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | Zm00001d004812_P002 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | Zm00001d023560_P002 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | Zm00001d053016_P002 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024373_P001 | Maize | cytosol | 97.14 | 96.36 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 93.06 | 93.44 |
| Zm00001d026254_P001 | Maize | plastid | 93.06 | 92.68 |
| CDX95588 | Canola | cytosol | 20.41 | 92.59 |
| Os04t0605900-01 | Rice | plastid | 90.2 | 90.57 |
| TraesCS5A01G452400.1 | Wheat | nucleus | 87.76 | 88.11 |
| TraesCS5B01G461300.1 | Wheat | cytosol | 87.76 | 88.11 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 87.76 | 88.11 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 87.76 | 87.04 |
| Zm00001d030114_P001 | Maize | cytosol | 89.39 | 86.9 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 17.96 | 86.27 |
| TraesCS2D01G430500.1 | Wheat | golgi | 85.71 | 86.07 |
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 85.71 | 86.07 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 85.31 | 85.66 |
| GSMUA_Achr4P05780_001 | Banana | cytosol | 84.49 | 84.84 |
| GSMUA_Achr10P... | Banana | cytosol | 84.08 | 84.43 |
| GSMUA_Achr11P... | Banana | cytosol | 83.67 | 84.02 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 30.2 | 83.15 |
| KRH44630 | Soybean | cytosol | 79.18 | 79.84 |
| KRH47287 | Soybean | nucleus | 78.37 | 79.01 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 28.16 | 78.41 |
| PGSC0003DMT400075548 | Potato | cytosol | 76.73 | 78.33 |
| CDY17884 | Canola | cytosol, extracellular | 77.14 | 78.1 |
| Bra004806.1-P | Field mustard | cytosol | 77.14 | 78.1 |
| KRH37351 | Soybean | endoplasmic reticulum | 77.14 | 78.1 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 30.61 | 77.32 |
| AT2G01250.1 | Thale cress | cytosol | 76.33 | 77.27 |
| Bra037665.1-P | Field mustard | cytosol | 76.33 | 77.27 |
| CDY37358 | Canola | cytosol | 76.33 | 77.27 |
| AT3G13580.3 | Thale cress | cytosol | 76.73 | 77.05 |
| CDX77810 | Canola | cytosol, extracellular | 75.92 | 76.86 |
| Bra017461.1-P | Field mustard | cytosol | 75.92 | 76.86 |
| Bra014334.1-P | Field mustard | cytosol | 75.92 | 76.86 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 75.92 | 76.86 |
| CDY40393 | Canola | cytosol | 75.92 | 76.86 |
| PGSC0003DMT400051218 | Potato | cytosol | 75.92 | 76.86 |
| CDY17686 | Canola | cytosol | 75.92 | 76.86 |
| CDX83440 | Canola | cytosol, extracellular | 75.92 | 76.54 |
| CDY25941 | Canola | cytosol | 75.51 | 76.45 |
| CDY41074 | Canola | cytosol | 75.51 | 76.45 |
| Bra024895.1-P | Field mustard | cytosol | 75.51 | 76.45 |
| PGSC0003DMT400053653 | Potato | cytosol | 76.33 | 76.33 |
| Bra000341.1-P | Field mustard | cytosol | 60.82 | 76.02 |
| AT2G44120.2 | Thale cress | cytosol | 75.1 | 74.49 |
| Zm00001d041838_P003 | Maize | mitochondrion | 37.96 | 74.4 |
| CDY30456 | Canola | cytosol | 77.14 | 73.54 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 84.49 | 70.89 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 77.96 | 70.22 |
| GSMUA_Achr4P12660_001 | Banana | cytosol | 82.04 | 69.31 |
| KRH25929 | Soybean | cytosol | 23.27 | 65.52 |
| CDY23419 | Canola | extracellular | 76.33 | 62.33 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 28.16 | 55.65 |
| CDY01953 | Canola | cytosol | 31.84 | 54.55 |
| Zm00001d052719_P002 | Maize | cytosol | 40.82 | 38.17 |
| Zm00001d031703_P001 | Maize | cytosol, plasma membrane | 40.41 | 37.79 |
| CDX79781 | Canola | extracellular | 24.49 | 37.5 |
Protein Annotations
| Gene3D:1.10.15.30 | EntrezGene:100282330 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | ProteinID:AQK52090.1 | UniProt:B4FTW5 |
| EMBL:BT040553 | ncoils:Coil | EMBL:EU960510 | EMBL:EU970962 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | InterPro:IPR023106 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf |
| PFAM:PF00327 | PFAM:PF08079 | ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_CS |
| InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 |
| TIGRFAMs:TIGR01310 | UniParc:UPI0000E64729 | EnsemblPlantsGene:Zm00001d050193 | EnsemblPlants:Zm00001d050193_P001 | EnsemblPlants:Zm00001d050193_T001 | SEG:seg |
Description
60S ribosomal protein L7-2
Coordinates
chr4:+:72526574..72528866
Molecular Weight (calculated)
28335.9 Da
IEP (calculated)
10.766
GRAVY (calculated)
-0.569
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAEAKAAA VPESVLRKRK REEQWAADKK EKALADRKKA LESRKIIFAR AKQYAEEYHA QEKELVQLKR EARLKGGFYV SPEAKLLFVV RIRGINAMHP
101: KTRKILQLLR LRQIFNGVFL KVNKATINML RRVEPYVAYG YPNLKSVREL IYKRGYGKLN KQRIPLSNNS VIEEGLGKHN IICIEDLVHE IMTVGPHFKE
201: ANNFLWPFKL KAPLGGLKKK RNHYVEGGDA GNRENYINEL IKRMN
101: KTRKILQLLR LRQIFNGVFL KVNKATINML RRVEPYVAYG YPNLKSVREL IYKRGYGKLN KQRIPLSNNS VIEEGLGKHN IICIEDLVHE IMTVGPHFKE
201: ANNFLWPFKL KAPLGGLKKK RNHYVEGGDA GNRENYINEL IKRMN
001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
Arabidopsis Description
RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.