Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05780_001 | Banana | cytosol | 80.16 | 81.15 |
| GSMUA_Achr11P... | Banana | cytosol | 78.54 | 79.51 |
| GSMUA_Achr10P... | Banana | cytosol | 78.14 | 79.1 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 25.91 | 72.73 |
| GSMUA_Achr4P12660_001 | Banana | cytosol | 77.73 | 66.21 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 39.68 | 55.06 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 26.72 | 53.23 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.12 | 31.65 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | ncoils:Coil | EnsemblPlantsGene:GSMUA_Achr9G22960_001 | EnsemblPlants:GSMUA_Achr9P22960_001 |
| EnsemblPlants:GSMUA_Achr9T22960_001 | InterPro:IPR023106 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | UniProt:M0U2Q5 | PFAM:PF00327 |
| ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like |
| InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 | UniParc:UPI0002965A97 | SEG:seg |
Description
60S ribosomal protein L7-4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22960_001]
Coordinates
chr9:+:27956843..27958245
Molecular Weight (calculated)
28605.5 Da
IEP (calculated)
11.102
GRAVY (calculated)
-0.518
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEEAKVVI PESVLKNRKR EAQRALAKKQ ERENRELIFT RASSTPSSTR HRCATRPVEK ELIRLELIRL KREGRMKGGF YVSPEAKLLF IIRFRGINAM
101: HPKTRKILQL LRLRQTINSV FLKVNKATMN MLQTVEPYVT SGYPNLKIVR ELIYKRGYGK LNKQRIPLAD NSIIEHGLGK YGIICIEDLV HEIMIVGPHF
201: KQANNFLWPS KLKAPLGGLK KKRNHYVKGG DAGNREDHIN ELIRRMN
101: HPKTRKILQL LRLRQTINSV FLKVNKATMN MLQTVEPYVT SGYPNLKIVR ELIYKRGYGK LNKQRIPLAD NSIIEHGLGK YGIICIEDLV HEIMIVGPHF
201: KQANNFLWPS KLKAPLGGLK KKRNHYVKGG DAGNREDHIN ELIRRMN
001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
Arabidopsis Description
RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.