Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | HORVU4Hr1G019530.1 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | HORVU5Hr1G032550.3 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95588 | Canola | cytosol | 18.92 | 25.93 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 20.27 | 17.05 |
| Zm00001d041838_P003 | Maize | mitochondrion | 24.32 | 14.4 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 20.27 | 12.1 |
| Bra000341.1-P | Field mustard | cytosol | 27.03 | 10.2 |
| CDY37358 | Canola | cytosol | 28.38 | 8.68 |
| CDY25941 | Canola | cytosol | 28.38 | 8.68 |
| CDY17686 | Canola | cytosol | 28.38 | 8.68 |
| CDX77810 | Canola | cytosol, extracellular | 28.38 | 8.68 |
| Bra024895.1-P | Field mustard | cytosol | 28.38 | 8.68 |
| Bra017461.1-P | Field mustard | cytosol | 28.38 | 8.68 |
| Bra014334.1-P | Field mustard | cytosol | 28.38 | 8.68 |
| CDY40393 | Canola | cytosol | 28.38 | 8.68 |
| CDY41074 | Canola | cytosol | 28.38 | 8.68 |
| AT2G01250.1 | Thale cress | cytosol | 27.03 | 8.26 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 27.03 | 8.26 |
| PGSC0003DMT400051218 | Potato | cytosol | 27.03 | 8.26 |
| CDY17884 | Canola | cytosol, extracellular | 27.03 | 8.26 |
| Bra037665.1-P | Field mustard | cytosol | 27.03 | 8.26 |
| Bra004806.1-P | Field mustard | cytosol | 27.03 | 8.26 |
| CDX83440 | Canola | cytosol, extracellular | 27.03 | 8.23 |
| AT3G13580.3 | Thale cress | cytosol | 27.03 | 8.2 |
| AT2G44120.2 | Thale cress | cytosol | 27.03 | 8.1 |
| KRH37351 | Soybean | endoplasmic reticulum | 25.68 | 7.85 |
| KRH44630 | Soybean | cytosol | 25.68 | 7.82 |
| KRH47287 | Soybean | nucleus | 25.68 | 7.82 |
| GSMUA_Achr4P05780_001 | Banana | cytosol | 25.68 | 7.79 |
| GSMUA_Achr11P... | Banana | cytosol | 25.68 | 7.79 |
| CDY30456 | Canola | cytosol | 27.03 | 7.78 |
| PGSC0003DMT400053653 | Potato | cytosol | 25.68 | 7.76 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 25.68 | 7.69 |
| PGSC0003DMT400075548 | Potato | cytosol | 24.32 | 7.5 |
| GSMUA_Achr10P... | Banana | cytosol | 24.32 | 7.38 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 25.68 | 6.99 |
| CDY23419 | Canola | extracellular | 27.03 | 6.67 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 25.68 | 6.51 |
| GSMUA_Achr4P12660_001 | Banana | cytosol | 24.32 | 6.21 |
| KRH25929 | Soybean | cytosol | 5.41 | 4.6 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 2.7 | 2.25 |
| CDY01953 | Canola | cytosol | 4.05 | 2.1 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 2.7 | 2.06 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 0.0 | 0.0 |
| CDX79781 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G109020.1 | EnsemblPlantsGene:HORVU5Hr1G109020 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | PANTHER:PTHR11524 | SUPFAM:SSF55129 |
| UniParc:UPI000B477555 | UniProt:A0A287SNR7 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:629058461..629059701
Molecular Weight (calculated)
8372.3 Da
IEP (calculated)
6.954
GRAVY (calculated)
0.074
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MVLAILLSYY MDLGKHNIIC IEGLVHEIFT VSPHFKEANN FLVAIQVDGF ARRPQEEEKP LRRLHPPLTS LSGG
001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
Arabidopsis Description
Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.