Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G000090.6 | Barley | cytosol, mitochondrion, nucleus | 53.65 | 69.71 |
| TraesCS4A01G311200.1 | Wheat | nucleus | 63.76 | 63.5 |
| TraesCS4B01G003100.1 | Wheat | nucleus | 62.92 | 63.01 |
| KXG35138 | Sorghum | nucleus | 55.76 | 56.71 |
| Zm00001d019766_P001 | Maize | nucleus | 14.47 | 51.5 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 25.14 | 41.63 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 37.22 | 39.79 |
| KRH66429 | Soybean | nucleus | 11.66 | 38.97 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 37.08 | 36.02 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 37.5 | 35.46 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 38.06 | 35.38 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 41.01 | 33.84 |
| PGSC0003DMT400070376 | Potato | nucleus | 40.17 | 33.1 |
| PGSC0003DMT400043571 | Potato | nucleus | 39.47 | 32.71 |
| Bra029846.1-P | Field mustard | nucleus | 34.55 | 31.82 |
| Bra009452.1-P | Field mustard | nucleus | 37.36 | 31.78 |
| AT5G04460.1 | Thale cress | nucleus | 37.92 | 31.29 |
| Bra034121.1-P | Field mustard | nucleus | 34.97 | 31.12 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 35.11 | 30.79 |
| CDX71406 | Canola | cytosol | 21.77 | 27.73 |
| TraesCS4D01G354300.1 | Wheat | plastid | 27.39 | 27.5 |
| PGSC0003DMT400018447 | Potato | nucleus | 27.95 | 26.08 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 26.26 | 24.48 |
| AT2G27950.2 | Thale cress | nucleus | 28.51 | 24.2 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 29.35 | 24.19 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 8.99 | 8.45 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G003000.2 | EnsemblPlantsGene:TraesCS4D01G003000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:1370358..1374303
Molecular Weight (calculated)
79950.6 Da
IEP (calculated)
4.864
GRAVY (calculated)
-0.976
Length
712 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAPPSVTA PRRRPRREPS EPRSESDWEE GSSSREGSPG ADSADGDAVR RAARRWSHDR AARISATPAD AGWWLGEIER DRVRLVRDWV QVQMEAARDR
101: DQGGADGGDP PHPPPSPAAG PRIRGRQARL ELVMRLAADR HAELQRLSLR RAVSAFPHRN RIHALLRGRF LRNGGLPEEE RRQPSVAARE LGQLRQRHPV
201: SGLRLENLVR GQAATRSDSS SAQTVELSTI DHSESSRTAS SEDTQDTRQQ ANDNVGLQRI GDAATGSDYG SNAPSIAEGL SEPHSQEEGW QEDLEVVERR
301: RDWDQFSHAI TTTGEGSGRN WIESADSSSS SSDERTTEAG DHQGASYLLE TSDESTISDN NLPEAHEEQI DSNHLPEALE GNNHLQEARG EWNREGNDPA
401: EVRDEWHSDG HFPEVNEVWH DDDESNGSAH NWHDDHSEQP ADQESTLIRR VNTFTPGDDD NVYSTELREL LSRRSVSNLL DSAFRENLDR LIRSYVERQG
501: RGPLSLNLQG TPAVAAATPD PQEQDQEEQR HGDDDEEQQL LRDAANVRPR LVIPPPPMPP RQPLWHSELH HNNWMRQNIN RSDIEWEAIN DLRADMARLQ
601: QGMGHMQRML EACMDMQLEL QRSVRQEVSA ALNRFIGEQG EPKETIDDGS KWMNVRKGTC CVCCDTPIDS LLYRCGHMCT CSKCANELVR SGGKCPLCRA
701: PIIEVIRAYF IM
101: DQGGADGGDP PHPPPSPAAG PRIRGRQARL ELVMRLAADR HAELQRLSLR RAVSAFPHRN RIHALLRGRF LRNGGLPEEE RRQPSVAARE LGQLRQRHPV
201: SGLRLENLVR GQAATRSDSS SAQTVELSTI DHSESSRTAS SEDTQDTRQQ ANDNVGLQRI GDAATGSDYG SNAPSIAEGL SEPHSQEEGW QEDLEVVERR
301: RDWDQFSHAI TTTGEGSGRN WIESADSSSS SSDERTTEAG DHQGASYLLE TSDESTISDN NLPEAHEEQI DSNHLPEALE GNNHLQEARG EWNREGNDPA
401: EVRDEWHSDG HFPEVNEVWH DDDESNGSAH NWHDDHSEQP ADQESTLIRR VNTFTPGDDD NVYSTELREL LSRRSVSNLL DSAFRENLDR LIRSYVERQG
501: RGPLSLNLQG TPAVAAATPD PQEQDQEEQR HGDDDEEQQL LRDAANVRPR LVIPPPPMPP RQPLWHSELH HNNWMRQNIN RSDIEWEAIN DLRADMARLQ
601: QGMGHMQRML EACMDMQLEL QRSVRQEVSA ALNRFIGEQG EPKETIDDGS KWMNVRKGTC CVCCDTPIDS LLYRCGHMCT CSKCANELVR SGGKCPLCRA
701: PIIEVIRAYF IM
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.