Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G003100.1 | Wheat | nucleus | 89.79 | 90.3 |
| TraesCS4D01G003000.2 | Wheat | nucleus | 63.5 | 63.76 |
| HORVU4Hr1G000090.6 | Barley | cytosol, mitochondrion, nucleus | 46.57 | 60.77 |
| Zm00001d019766_P001 | Maize | nucleus | 13.85 | 49.5 |
| KXG35138 | Sorghum | nucleus | 47.69 | 48.71 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 23.64 | 39.3 |
| KRH66429 | Soybean | nucleus | 11.33 | 38.03 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 35.1 | 37.69 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 35.66 | 34.79 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 36.36 | 34.53 |
| TraesCS6A01G405400.1 | Wheat | nucleus | 35.38 | 33.03 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 39.02 | 32.33 |
| PGSC0003DMT400070376 | Potato | nucleus | 37.76 | 31.25 |
| PGSC0003DMT400043571 | Potato | nucleus | 37.2 | 30.97 |
| Bra029846.1-P | Field mustard | nucleus | 32.45 | 30.01 |
| AT5G04460.1 | Thale cress | nucleus | 36.22 | 30.01 |
| Bra009452.1-P | Field mustard | nucleus | 34.97 | 29.87 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 33.15 | 29.19 |
| Bra034121.1-P | Field mustard | nucleus | 32.45 | 29.0 |
| CDX71406 | Canola | cytosol | 21.96 | 28.09 |
| TraesCS5A01G529500.1 | Wheat | plastid | 27.69 | 27.58 |
| PGSC0003DMT400018447 | Potato | nucleus | 26.57 | 24.9 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 28.67 | 23.73 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 25.31 | 23.69 |
| AT2G27950.2 | Thale cress | nucleus | 27.41 | 23.36 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 7.97 | 7.71 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G311200.1 | EnsemblPlantsGene:TraesCS4A01G311200 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:603451508..603455462
Molecular Weight (calculated)
80461.3 Da
IEP (calculated)
4.787
GRAVY (calculated)
-0.989
Length
715 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAPPPAPV TAPRRRPRRE PSEPRSESDW EEGSSSREGS PGADSADGDA VRRAARRWSD DRAARISGTA ADAGWWLGEI ERDRVRLVRD WVQVQMEAAR
101: DRDRDQGGAD GGDPPHPPPS PAAGPRIRGR QARLELVMRL AADRHAELQR LSLRRAVSAF PHRNRIHALL RGRFLRNGGL PEEERRQPSV AARELGQLRQ
201: RHPVSGLRLE NLVRGQAASR SDSSSAQTVE LSTIDHSESS RAASEDTQDM HRQANDNVDL QRIGETATGS DYGSNAPSIA EGLSEPHSQE EGWQEDLEVV
301: DRRRDWDQFS HAITTTGEGS GRNWIESADS SSSSSDERTT EAGDRQGASY LLETSDESTI SDNNLPEAHE EQLDSNHLPE ALEGNNHLQE ARGEWNREGN
401: DPAQVRDEWP SDDHFPEMNE VWHDDDESNG SAHNWHDDHS EQPVDQESTL IRRVNTFTPG DDDNVYSTEL RELLSRRSVS NLLDSAFREN LDRLIRSYVE
501: RQGRGPLSLN LQGTPAVAAA TPDQQEQDQE EQRHGDDDEE QQLLRDAANV RPRLVIPPPP MPPRQPLWHS ELHHNNWMRQ NINRSDIEWE AINDLRADMA
601: RLQQGMGHMQ RMLEACMDMQ LELQRSVRQE VSAALNRFIG EQGEPKETID DGSKWMNVRK GTCCVCCDTP IDSLLYRCGH MCTCSKCANE LVRSGGKCPL
701: CRAPIIEVIR AYFIM
101: DRDRDQGGAD GGDPPHPPPS PAAGPRIRGR QARLELVMRL AADRHAELQR LSLRRAVSAF PHRNRIHALL RGRFLRNGGL PEEERRQPSV AARELGQLRQ
201: RHPVSGLRLE NLVRGQAASR SDSSSAQTVE LSTIDHSESS RAASEDTQDM HRQANDNVDL QRIGETATGS DYGSNAPSIA EGLSEPHSQE EGWQEDLEVV
301: DRRRDWDQFS HAITTTGEGS GRNWIESADS SSSSSDERTT EAGDRQGASY LLETSDESTI SDNNLPEAHE EQLDSNHLPE ALEGNNHLQE ARGEWNREGN
401: DPAQVRDEWP SDDHFPEMNE VWHDDDESNG SAHNWHDDHS EQPVDQESTL IRRVNTFTPG DDDNVYSTEL RELLSRRSVS NLLDSAFREN LDRLIRSYVE
501: RQGRGPLSLN LQGTPAVAAA TPDQQEQDQE EQRHGDDDEE QQLLRDAANV RPRLVIPPPP MPPRQPLWHS ELHHNNWMRQ NINRSDIEWE AINDLRADMA
601: RLQQGMGHMQ RMLEACMDMQ LELQRSVRQE VSAALNRFIG EQGEPKETID DGSKWMNVRK GTCCVCCDTP IDSLLYRCGH MCTCSKCANE LVRSGGKCPL
701: CRAPIIEVIR AYFIM
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
Arabidopsis Description
Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.