Factsheet for Bra011990.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04520	Canola	cytosol, plastid	71.47	80.53
AT2G27950.2	Thale cress	nucleus	55.1	50.18
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	40.18	37.81
KRH25125	Soybean	nucleus	40.31	36.07
KRH30548	Soybean	nucleus	40.05	35.58
Zm00001d019766_P001	Maize	nucleus	9.29	35.5
KRH22786	Soybean	nucleus	38.22	34.39
KRH26545	Soybean	nucleus	34.82	33.42
Zm00001d019765_P001	Maize	nucleus	16.1	32.89
GSMUA_Achr1P00380_001	Banana	nucleus	28.66	32.88
GSMUA_Achr1P17370_001	Banana	nucleus	29.71	32.61
Solyc11g066500.1.1	Tomato	nucleus, plastid	32.85	30.99
Bra009452.1-P	Field mustard	nucleus	33.64	30.7
GSMUA_Achr8P11220_001	Banana	nucleus	30.1	30.54
Bra029846.1-P	Field mustard	nucleus	30.89	30.53
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	21.6	30.11
Bra034121.1-P	Field mustard	nucleus	31.41	30.0
KXG35138	Sorghum	nucleus	27.36	29.86
GSMUA_AchrUn_...	Banana	nucleus	29.97	29.7
PGSC0003DMT400018447	Potato	nucleus	29.58	29.62
GSMUA_Achr5P12430_001	Banana	nucleus	28.27	29.47
PGSC0003DMT400001109	Potato	mitochondrion	32.33	28.59
GSMUA_Achr11P...	Banana	nucleus	25.92	28.01
Os02t0823300-01	Rice	nucleus	27.62	27.98
EES06049	Sorghum	nucleus	27.75	27.79
Solyc06g074760.1.1	Tomato	nucleus	27.75	27.68
Os09t0570500-01	Rice	nucleus	16.1	27.27
OQU93435	Sorghum	nucleus	23.3	27.26
TraesCS4D01G003000.2	Wheat	nucleus	24.48	26.26
TraesCS6D01G389100.1	Wheat	nucleus	25.92	25.85
TraesCS6A01G405400.1	Wheat	nucleus	25.79	25.72
Zm00001d027308_P001	Maize	nucleus	22.51	25.71
TraesCS6B01G449800.2	Wheat	nucleus	25.79	25.65
TraesCS4A01G311200.1	Wheat	nucleus	23.69	25.31
GSMUA_Achr2P03990_001	Banana	nucleus	23.17	25.18
TraesCS4B01G003100.1	Wheat	nucleus	23.43	25.18
HORVU6Hr1G092920.1	Barley	cytosol	21.07	25.08
HORVU4Hr1G086680.2	Barley	mitochondrion	14.27	25.06
Zm00001d051871_P002	Maize	nucleus	26.83	24.4
TraesCS4D01G354300.1	Wheat	plastid	22.51	24.26
TraesCS5A01G529500.1	Wheat	plastid	22.51	23.96
Bra021939.1-P	Field mustard	nucleus, plastid	8.12	9.95
Bra005381.1-P	Field mustard	nucleus	7.59	8.95
Bra039871.1-P	Field mustard	nucleus	7.33	7.98
Bra023148.1-P	Field mustard	nucleus	6.81	7.38
Bra013447.1-P	Field mustard	nucleus	8.77	5.42

Protein Annotations

EnsemblPlants:Bra011990.1	EnsemblPlants:Bra011990.1-P	EnsemblPlantsGene:Bra011990	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106
SEG:seg	UniParc:UPI000254193E	UniProt:M4D682	MapMan:35.2	:	:

Description

AT2G27950 (E=2e-237) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G04460.1); Has 502 Blast hits to 402 proteins in 102 species: Archae - 0; Bacteria - 164; Metazoa - 106; Fungi - 26; Plants - 62; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).

Coordinates

chrA07:-:10711746..10714758

Molecular Weight (calculated)

86385.1 Da

IEP (calculated)

4.318

GRAVY (calculated)

-0.993

Length

764 amino acids

Sequence
(BLAST)

001: MAIAGLQNIL AINSSFPRDT RQMETEGRPG VRASSLLQMW RELEDDHVTG HARERRSGPS SPSRGDDSNI SAHGVVLDNV NLGESELGGC SPTGSEHSSD
101: LGMVERERVR QIFREWMSSG TGEQSSAPSP SRAEWLGETE QERVRIIREM VQMNSQQRPV LGDSREDQPA EVANQIERVL DGMVVNGNCV QNEHARRGIR
201: KLCGRQVWVD MLKMAERERQ RELQGLMQHH AVSNFAHRNR IQALLRGRFL RNGVKDDKEK PTSSAATELG FLRERQTVSE LREEFISRLD RSVSGQASTS
301: HSETSSDTET DDSRGEQNNQ DNINDADGGS DHNRREADSH NSLDEVTDSR RSNNWSTSLE ERTARVEGWQ GQLPENIQSE WQRSEGDEFS QRRNDAEADL
401: NSHQREDAAS CSSSEQSLQR PEEIATSGPT IDLQEHLPEN INLTFTLEEQ SEEEILANEE SDWQLINGEW RDDAEEEADT NVSESFPNQL SQLSSVDEDG
501: EDHGPLQPTE MQADDSDLQS TVQDWSEEHS DEDTVSIGRA ATFFPPDDDN GNMELRELSS RRRVSNLLQS GFRENLDQLI QSYVDRRSRD PVDWEEHETF
601: PDPLLADEHT EQHADDAQSG GGGGQEVDAV ESPPLSLPSP VIPVQAFWDH DRSNSSWPAH DMHQRIGMDW DSINDLRIDM GRIHQRMDNL QRMLEACMEM
701: QLELQRSIRQ EVSAAMHRSA DSSGPSSSDA ESYESKWEYV RKGICCICCE SNIDSLLYRY VYGP

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.