Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G003000.2 | Wheat | nucleus | 69.71 | 53.65 |
| TraesCS4B01G003100.1 | Wheat | nucleus | 61.31 | 47.26 |
| TraesCS4A01G311200.1 | Wheat | nucleus | 60.77 | 46.57 |
| KXG35138 | Sorghum | nucleus | 53.1 | 41.57 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 31.93 | 40.7 |
| KRH66429 | Soybean | nucleus | 14.78 | 38.03 |
| HORVU4Hr1G086680.2 | Barley | mitochondrion | 27.92 | 35.17 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 40.69 | 34.74 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 39.23 | 32.28 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 39.23 | 29.33 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 38.32 | 27.89 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 43.07 | 27.35 |
| PGSC0003DMT400070376 | Potato | nucleus | 42.88 | 27.2 |
| PGSC0003DMT400043571 | Potato | nucleus | 41.97 | 26.78 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 39.05 | 26.35 |
| CDX71406 | Canola | cytosol | 26.82 | 26.3 |
| Bra029846.1-P | Field mustard | nucleus | 35.4 | 25.1 |
| Bra009452.1-P | Field mustard | nucleus | 37.96 | 24.85 |
| AT5G04460.1 | Thale cress | nucleus | 39.05 | 24.8 |
| Bra034121.1-P | Field mustard | nucleus | 34.85 | 23.88 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 30.11 | 21.6 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 33.21 | 21.06 |
| PGSC0003DMT400018447 | Potato | nucleus | 28.83 | 20.71 |
| AT2G27950.2 | Thale cress | nucleus | 30.47 | 19.9 |
| Zm00001d019766_P001 | Maize | nucleus | 6.93 | 19.0 |
| HORVU2Hr1G048520.1 | Barley | plastid | 5.11 | 4.35 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G000090.6 | EnsemblPlantsGene:HORVU4Hr1G000090 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI000B47930E | UniProt:A0A287MVA4 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:369899..374028
Molecular Weight (calculated)
62055.8 Da
IEP (calculated)
4.451
GRAVY (calculated)
-0.967
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: AIALLRGRFL RNGGLPEEER RQPSVAAREL GQLRQRHPVS GLRLENLMRG QAASRSDSSS AQTVDLSTND HSESSHTASE DAQGTRQQQA NDNVDLHRIG
101: DTATASDYGS NAPSIAEGLS EPHSQEEGWQ EDLEVVDRRR DWDQFSHAIT TTGEGSERNW LENADSSSSS SDERTMEAGD HQEVSYLLET SDESTISDNN
201: LPEAHEEQLD SNHLPEALQD NNHLQEARGE WNGEGNDPTE VRDEWHSDDH FPEINEVWHD DDESNGSAHN WHDDHSEQPV DQESTLIRRA NTFTPGDDDN
301: VYSTELRELL SRRSVSNLLD SAFRENLDRL IRSYVERQGR GPLSLNLEGT PAAAAAPEPQ EQAQEEQHRE DDEEQELLRD ANVRPRLVIP PPPLPPRQPL
401: WHSELHHNNW MRQNINRSDI EWEAINDLRA DMARLQQGMG HMQRMLEACM DMQLELQRSV RQEVSAALNR FIGERGETKE TIDDGSKWMN VRKGTCCVCC
501: DTPIDSLLYR CGHMCTCSKC ANELVRSGGK CPLCRAPIIE VIRAYFIM
101: DTATASDYGS NAPSIAEGLS EPHSQEEGWQ EDLEVVDRRR DWDQFSHAIT TTGEGSERNW LENADSSSSS SDERTMEAGD HQEVSYLLET SDESTISDNN
201: LPEAHEEQLD SNHLPEALQD NNHLQEARGE WNGEGNDPTE VRDEWHSDDH FPEINEVWHD DDESNGSAHN WHDDHSEQPV DQESTLIRRA NTFTPGDDDN
301: VYSTELRELL SRRSVSNLLD SAFRENLDRL IRSYVERQGR GPLSLNLEGT PAAAAAPEPQ EQAQEEQHRE DDEEQELLRD ANVRPRLVIP PPPLPPRQPL
401: WHSELHHNNW MRQNINRSDI EWEAINDLRA DMARLQQGMG HMQRMLEACM DMQLELQRSV RQEVSAALNR FIGERGETKE TIDDGSKWMN VRKGTCCVCC
501: DTPIDSLLYR CGHMCTCSKC ANELVRSGGK CPLCRAPIIE VIRAYFIM
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.