Factsheet for GSMUA_Achr8P11220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00380_001	Banana	nucleus	44.09	49.85
GSMUA_Achr1P17370_001	Banana	nucleus	44.09	47.7
GSMUA_Achr11P...	Banana	nucleus	44.75	47.67
GSMUA_AchrUn_...	Banana	nucleus	48.74	47.6
Zm00001d019766_P001	Maize	nucleus	12.62	47.5
VIT_13s0019g05390.t01	Wine grape	nucleus	51.53	44.96
GSMUA_Achr5P12430_001	Banana	nucleus	43.56	44.75
PGSC0003DMT400070376	Potato	nucleus	50.2	43.75
PGSC0003DMT400043571	Potato	nucleus	47.94	42.03
Bra009452.1-P	Field mustard	nucleus	46.22	41.58
Bra029846.1-P	Field mustard	nucleus	42.5	41.4
Os02t0823300-01	Rice	nucleus	41.3	41.25
AT5G04460.1	Thale cress	nucleus	47.01	41.02
Bra034121.1-P	Field mustard	nucleus	43.56	41.0
Solyc03g071680.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	23.37	40.93
EES06049	Sorghum	nucleus	41.04	40.5
KXG35138	Sorghum	nucleus	37.32	40.14
KRH66429	Soybean	nucleus	11.29	39.91
TraesCS6D01G389100.1	Wheat	nucleus	40.37	39.69
TraesCS6A01G405400.1	Wheat	nucleus	40.11	39.43
GSMUA_Achr2P03990_001	Banana	nucleus	36.52	39.12
TraesCS6B01G449800.2	Wheat	nucleus	39.71	38.93
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	27.89	38.32
OQU93435	Sorghum	nucleus	32.93	37.98
TraesCS4D01G003000.2	Wheat	nucleus	35.46	37.5
Zm00001d027308_P001	Maize	nucleus	33.07	37.22
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	40.11	37.19
TraesCS4B01G003100.1	Wheat	nucleus	34.93	36.99
Zm00001d051871_P002	Maize	nucleus	41.04	36.79
TraesCS4A01G311200.1	Wheat	nucleus	34.53	36.36
HORVU6Hr1G092920.1	Barley	cytosol	29.75	34.89
HORVU4Hr1G086680.2	Barley	mitochondrion	20.05	34.71
TraesCS4D01G354300.1	Wheat	plastid	32.27	34.27
TraesCS5A01G529500.1	Wheat	plastid	32.14	33.7
PGSC0003DMT400018447	Potato	nucleus	32.01	31.59
Bra011990.1-P	Field mustard	nucleus, plastid	30.54	30.1
AT2G27950.2	Thale cress	nucleus	32.8	29.44
CDX71406	Canola	cytosol	20.98	28.26
PGSC0003DMT400001109	Potato	mitochondrion	32.4	28.24
GSMUA_Achr4P33210_001	Banana	nucleus	7.97	11.05
GSMUA_Achr7P00390_001	Banana	nucleus	9.96	10.32

Protein Annotations

EnsemblPlants:GSMUA_Achr8P11220_001	EnsemblPlants:GSMUA_Achr8T11220_001	EnsemblPlantsGene:GSMUA_Achr8G11220_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000295E615	UniProt:M0TPH5	MapMan:35.2

Description

protein binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G11220_001]

Coordinates

chr8:+:8108434..8117170

Molecular Weight (calculated)

86226.3 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.951

Length

753 amino acids

Sequence
(BLAST)

001: MADFRQKQDT ADQEFRRGLE ELVRGHIDGC MTAALASCSS AASAVDNEDD PAPGGGGDGA DQLARRRRSR WVARQAEEMI TTIERRNRES ELMALARLHT
101: VSMLDSSFLR ESRRSQTTVE RPVAARASSV LQRWRELEGA SEVTDDRESS REQSPDLGDG WDGERERVRQ IVRGWMMGTA VAADAALRTL PRRESPRSDW
201: LGETERERVR LARERVQLVS QQRHAQGSRT GEIERSRSAT DHGNASEQAR RHLPRLRGRQ ALHDLVMRNV QERERELQGL SEHRAVSCFA YRSRIQSLLR
301: GRFLRNSGPT EDERRSSVAA RELGQLRQHH PVSGLREELN SRQESVMSSQ ANSRSDAFDS HDTNNLDESQ TDTGISEIYE ATTTPVTVET ENSTESENTE
401: WTEFTSQVEN WQENAVGEED WQQSTEDRFS GWHDGSEAEY SGNWQENIDH AQPHETPEGD AENRHHQVHG YWQEDDPQET LPIWHDESLP PLQGQQSISI
501: RRVNRFILPD DDNVYSMELR ELLSRRSVSN LLRSGFRESL DQLIESYVRR QEHNPFDWDL QRTESVSDSQ EVDQGQQRDD MIEDQQISID ETPPMLPSPP
601: MPPPQPLWHS NLHHTNWTRR NIHNSEWDAI NDLRADMARL QEGMSHMQQI LEACFDMQLE LQRAVKQEVS AALIRCSSGQ GEEEEYSQDV SRWCHVRKGT
701: CCICCDSHID SLLYRCGHMC TCSKCANELA QAEGKCPLCR APILEVIRAY SVA

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.