Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G389100.1 | Wheat | nucleus | 93.6 | 93.6 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 93.6 | 93.36 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 69.06 | 82.4 |
| Os02t0823300-01 | Rice | nucleus | 74.28 | 75.46 |
| EES06049 | Sorghum | nucleus | 71.67 | 71.95 |
| Zm00001d051871_P002 | Maize | nucleus | 67.1 | 61.19 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 37.08 | 42.64 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 39.43 | 40.11 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 37.21 | 38.88 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 43.73 | 38.82 |
| PGSC0003DMT400070376 | Potato | nucleus | 42.43 | 37.62 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 21.02 | 37.44 |
| PGSC0003DMT400043571 | Potato | nucleus | 40.86 | 36.44 |
| Bra009452.1-P | Field mustard | nucleus | 39.03 | 35.72 |
| Bra029846.1-P | Field mustard | nucleus | 36.03 | 35.7 |
| TraesCS4A01G311200.1 | Wheat | nucleus | 33.03 | 35.38 |
| AT5G04460.1 | Thale cress | nucleus | 39.43 | 34.99 |
| Bra034121.1-P | Field mustard | nucleus | 36.03 | 34.5 |
| TraesCS5A01G529500.1 | Wheat | plastid | 30.16 | 32.17 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 34.07 | 32.14 |
| KRH66429 | Soybean | nucleus | 8.88 | 31.92 |
| CDX71406 | Canola | cytosol | 20.1 | 27.55 |
| AT2G27950.2 | Thale cress | nucleus | 29.37 | 26.82 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 25.72 | 25.79 |
| PGSC0003DMT400018447 | Potato | nucleus | 25.59 | 25.69 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 27.94 | 24.77 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 9.01 | 9.34 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G405400.1 | EnsemblPlantsGene:TraesCS6A01G405400 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6A:-:611410243..611416026
Molecular Weight (calculated)
85861.6 Da
IEP (calculated)
5.052
GRAVY (calculated)
-0.821
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDEYHHRMG AAAADFRRDL EDLVCDHLGG CYSPPPSSSS SLCSAAGGGG GGGAEGGGGV GGGGEEEAES SRRRRRESRL LSRWVARQAE EVLSSMEREV
101: ERRNRESELL ALTRLHPVST LDPSAFLLSS PPPPRPQAPS PAAPSSLLQM WRELEHRRAD AGQPFDREPS PDTPDRHRER VRQIARRLTT STDSPTAAAA
201: TATGEWLGET ERQRVRLVRE WVQMASQPRD SRAASRREEP TAAERDRRGE PPRLRGRQAR TDVITRMSRE RQRELQGLSG YHIVSQFPQR SRSRIQGLLR
301: VRFLRNAVAP AEEERQPSVA ARELGQLRQS HRVSTLRSES AVSSQDVSLS DAPVAENVAL LGNDETEQAA AVGHLTGSED VAQTTPENVG LQEDNVDVAE
401: AESPATTSGD IVDMQVSQVD NGLQDETERE TIFWQPSLDV RLDRWPNETA ENSDRNWEDN AEELHSEIVE DDDRENENLQ DEHDVWHDDE SHGTEENWQD
501: DFHDAALDTG PIPRIENSFN LRDEANLHNM ELRELLSRRS VSNLLSNGFG DSLEQLIRSY VQRRGHAPLN WNLDTAMPTA NAPNGNQELV RNAENRQFQG
601: PVNRPALVIP PPPLPPRQPL WHRDLRHNTW SSRHRVHQEL DAINDLKADM NKLQQGMSSM QRMLEACMDM QLELQRSVRQ EVSAALSRFP GPEGMFLDLH
701: DDGTRWDQVR KGTCCVCCDT QIDSLLYRCG HMCTCSKCAN ELVRSGGKCP LCRAPIVEVV RAYAVL
101: ERRNRESELL ALTRLHPVST LDPSAFLLSS PPPPRPQAPS PAAPSSLLQM WRELEHRRAD AGQPFDREPS PDTPDRHRER VRQIARRLTT STDSPTAAAA
201: TATGEWLGET ERQRVRLVRE WVQMASQPRD SRAASRREEP TAAERDRRGE PPRLRGRQAR TDVITRMSRE RQRELQGLSG YHIVSQFPQR SRSRIQGLLR
301: VRFLRNAVAP AEEERQPSVA ARELGQLRQS HRVSTLRSES AVSSQDVSLS DAPVAENVAL LGNDETEQAA AVGHLTGSED VAQTTPENVG LQEDNVDVAE
401: AESPATTSGD IVDMQVSQVD NGLQDETERE TIFWQPSLDV RLDRWPNETA ENSDRNWEDN AEELHSEIVE DDDRENENLQ DEHDVWHDDE SHGTEENWQD
501: DFHDAALDTG PIPRIENSFN LRDEANLHNM ELRELLSRRS VSNLLSNGFG DSLEQLIRSY VQRRGHAPLN WNLDTAMPTA NAPNGNQELV RNAENRQFQG
601: PVNRPALVIP PPPLPPRQPL WHRDLRHNTW SSRHRVHQEL DAINDLKADM NKLQQGMSSM QRMLEACMDM QLELQRSVRQ EVSAALSRFP GPEGMFLDLH
701: DDGTRWDQVR KGTCCVCCDT QIDSLLYRCG HMCTCSKCAN ELVRSGGKCP LCRAPIVEVV RAYAVL
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.