Factsheet for GSMUA_Achr5P12430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00380_001	Banana	nucleus	61.26	67.42
GSMUA_Achr1P17370_001	Banana	nucleus	47.07	49.57
GSMUA_AchrUn_...	Banana	nucleus	47.07	44.75
GSMUA_Achr8P11220_001	Banana	nucleus	44.75	43.56
Solyc03g071680.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	24.83	42.33
KRH66429	Soybean	nucleus	12.28	42.25
GSMUA_Achr11P...	Banana	nucleus	40.25	41.73
GSMUA_Achr2P03990_001	Banana	nucleus	38.88	40.54
Zm00001d019766_P001	Maize	nucleus	11.05	40.5
KXG35138	Sorghum	nucleus	37.79	39.57
VIT_13s0019g05390.t01	Wine grape	nucleus	46.52	39.51
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	29.33	39.23
PGSC0003DMT400070376	Potato	nucleus	45.57	38.66
Os02t0823300-01	Rice	nucleus	39.7	38.59
EES06049	Sorghum	nucleus	39.84	38.27
PGSC0003DMT400043571	Potato	nucleus	43.79	37.37
TraesCS6A01G405400.1	Wheat	nucleus	38.88	37.21
TraesCS4D01G003000.2	Wheat	nucleus	36.02	37.08
HORVU6Hr1G092920.1	Barley	cytosol	32.47	37.07
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	41.06	37.07
HORVU4Hr1G086680.2	Barley	mitochondrion	21.96	37.01
TraesCS6B01G449800.2	Wheat	nucleus	38.74	36.98
TraesCS6D01G389100.1	Wheat	nucleus	38.61	36.95
OQU93435	Sorghum	nucleus	31.79	35.68
TraesCS4A01G311200.1	Wheat	nucleus	34.79	35.66
TraesCS4B01G003100.1	Wheat	nucleus	34.38	35.44
Bra009452.1-P	Field mustard	nucleus	40.25	35.24
AT5G04460.1	Thale cress	nucleus	41.2	34.99
Bra034121.1-P	Field mustard	nucleus	37.79	34.62
Zm00001d027308_P001	Maize	nucleus	30.83	33.78
Zm00001d051871_P002	Maize	nucleus	38.61	33.69
Bra029846.1-P	Field mustard	nucleus	35.47	33.64
TraesCS4D01G354300.1	Wheat	plastid	30.83	31.88
TraesCS5A01G529500.1	Wheat	plastid	30.83	31.48
Bra011990.1-P	Field mustard	nucleus, plastid	29.47	28.27
CDX71406	Canola	cytosol	21.56	28.26
PGSC0003DMT400018447	Potato	nucleus	28.92	27.79
AT2G27950.2	Thale cress	nucleus	31.38	27.41
PGSC0003DMT400001109	Potato	mitochondrion	31.65	26.85
GSMUA_Achr4P33210_001	Banana	nucleus	8.19	11.05
GSMUA_Achr7P00390_001	Banana	nucleus	8.87	8.94

Protein Annotations

EnsemblPlants:GSMUA_Achr5P12430_001	EnsemblPlants:GSMUA_Achr5T12430_001	EnsemblPlantsGene:GSMUA_Achr5G12430_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000295EC1D	UniProt:M0SXX2	MapMan:35.2

Description

protein binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G12430_001]

Coordinates

chr5:+:8917591..8926428

Molecular Weight (calculated)

84172.3 Da

IEP (calculated)

5.716

GRAVY (calculated)

-0.771

Length

733 amino acids

Sequence
(BLAST)

001: MALARLHAVS MLDASFLRES RRAQSSVERP VAARASSVLR MWRELEDESI AGDRRSPAPS PTTAERVREI VSGWMTEIDM TDTASQILPG SDSPRSEWLD
101: ERERERVRLV REWMQTVSQQ RDGWASRREE RDREGLVANQ ENRQRQHVQR NLLRLRGRQA RLDLIMRNVR ERERELQALS EHQPVSHFAH RNRIQAVLRG
201: RFLRNGGPVE DGQRHSVAAG ELGQLRQHHT VSGFRYGFLL SLLKVCEIAT SYDKIFGTKF WTTFLSDGRN MVIRIIKKLI NPIFVSREGF RSREDGIVTG
301: PASNQSDGIV TGQASNQSVD VDNINVSSNN LFVSSTMEVL DETHDQFRAH DTNVDGHQPE EVYTTFQMES SMQISDMVGR GSAIQEDNWL ADDVEHEQRD
401: SQQPIELGST VQHDGPIEEH NSNWHENEDQ EWLHDAPEDE DGRDSHLLEA HEHWHEDNSQ VTEANWQDGP SDSFNEQHSF PVIRNTFVSS EDGDYVYNVE
501: LRELLSRRSV SNLLRSGFRE SLDQLVQSYI QRQGRDPFQW DMERTMPNHV LPGEDQSQQR DLIHGQRDSV TRPLHATPMP PTPPPLPPWH SDLHHSWSRQ
601: SIRRPEVEWD MINDLKADMA RLQQVMSNMQ RMLEACMDMQ LELQRAVRQE VSAALNRSVG EHGEESSQDG TKWRNVRKGV CCVCCDSHID SLLYRCGHMC
701: TCSRCANELV QGGGKCPLCR APIVEVIRAY SVV

Best Arabidopsis Sequence Match ( AT5G04460.1 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.