Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074760.1.1 | Tomato | nucleus | 66.45 | 66.19 |
| CDY04520 | Canola | cytosol, plastid | 31.98 | 35.99 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 36.57 | 34.36 |
| KRH26545 | Soybean | nucleus | 33.95 | 32.54 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 31.59 | 32.01 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 27.92 | 31.98 |
| GSMUA_Achr1P17370_001 | Banana | nucleus | 28.96 | 31.75 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 35.52 | 31.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.32 | 31.0 |
| PGSC0003DMT400070376 | Potato | nucleus | 34.99 | 30.9 |
| Os09t0570500-01 | Rice | nucleus | 18.09 | 30.6 |
| Zm00001d019766_P001 | Maize | nucleus | 7.99 | 30.5 |
| OQU93435 | Sorghum | nucleus | 25.95 | 30.32 |
| PGSC0003DMT400043571 | Potato | nucleus | 34.08 | 30.27 |
| KRH25125 | Soybean | nucleus | 33.42 | 29.86 |
| GSMUA_Achr11P... | Banana | nucleus | 27.52 | 29.7 |
| Zm00001d027308_P001 | Maize | nucleus | 25.95 | 29.6 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 29.62 | 29.58 |
| KXG35138 | Sorghum | nucleus | 27.13 | 29.57 |
| AT2G27950.2 | Thale cress | nucleus | 32.24 | 29.32 |
| KRH30548 | Soybean | nucleus | 32.63 | 28.95 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 27.79 | 28.92 |
| HORVU4Hr1G000090.6 | Barley | cytosol, mitochondrion, nucleus | 20.71 | 28.83 |
| KRH22786 | Soybean | nucleus | 31.98 | 28.74 |
| Zm00001d019765_P001 | Maize | nucleus | 13.89 | 28.34 |
| GSMUA_Achr2P03990_001 | Banana | nucleus | 25.95 | 28.16 |
| Os02t0823300-01 | Rice | nucleus | 27.79 | 28.12 |
| TraesCS4D01G003000.2 | Wheat | nucleus | 26.08 | 27.95 |
| HORVU4Hr1G086680.2 | Barley | mitochondrion | 15.86 | 27.82 |
| EES06049 | Sorghum | nucleus | 27.39 | 27.39 |
| TraesCS4B01G003100.1 | Wheat | nucleus | 25.29 | 27.14 |
| TraesCS4A01G311200.1 | Wheat | nucleus | 24.9 | 26.57 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 22.02 | 26.17 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 25.82 | 25.65 |
| TraesCS6A01G405400.1 | Wheat | nucleus | 25.69 | 25.59 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 25.03 | 24.93 |
| TraesCS4D01G354300.1 | Wheat | plastid | 22.67 | 24.4 |
| Zm00001d051871_P002 | Maize | nucleus | 26.47 | 24.05 |
| TraesCS5A01G529500.1 | Wheat | plastid | 22.54 | 23.96 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 11.14 | 8.62 |
| PGSC0003DMT400035458 | Potato | nucleus | 8.39 | 6.18 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400018447 | EnsemblPlantsGene:PGSC0003DMG400007157 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400007157 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0002958BEB | UniProt:M1AAN2 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007157]
Coordinates
chr6:-:55302754..55306281
Molecular Weight (calculated)
87354.9 Da
IEP (calculated)
4.526
GRAVY (calculated)
-0.938
Length
763 amino acids
Sequence
(BLAST)
(BLAST)
001: MWQNQESEHG VNNSHARCGE RKIQQRTDIE NSNSTGPFLL YDQGIVMGNA SFEGANEACN GRVACQSQNV LENESEDNRS ILSDQSSDLG EIERERVRQV
101: FQDWMSTGVK DHSQSLSVSH KNNCLGAPWL GENERERVRI IREWVKINIQ QSGAGSPRDD GAADIGSQFE QVRDGSLFNH SENGERKSVR MYCGRKALLD
201: LLMKFQMERQ REIQGLLECK PVSNFTYRNR IQSLLKGRFL RNERLMTSDE RTTSDAASEL GILRQSHTVS YLRKEILSRL VDNARNSTKD VQLNASSTDD
301: LNRHHRSEQS QSNNEQEIID ESYDQSELDS EERETDGSHV VGNSESITSE EVNQQNSVDQ IAEHSNQIAA VESGSRGHVR EDHEPFHDND APRSEASDTH
401: EVYDHSHGLI SSTFEDYVWH VLSSQAEDPQ DVVTDHEERN LRQSEAPYEL VIEHGKSKQM SSSEHNETTN NTTEDMSGSW QEDSANHWYP ESSENDTEEQ
501: IYEQEQHEDW QSNDWLDMPS SQNAGSMRRV DSFYMPDDDS VYNIELRELL SRRRVSNLLQ SGFRESLDQL IQSYVERQGH ASEWYMDGTS SSPDDTDHEL
601: LQEYDNQDGP QINSESNPFA MTSLHVEPSL QLIGTDWEVI HELRNDMVRL QQRMDNMQRM FEKCMEMQVE LQRTVHQNVS AALNRYACST DIDACEDSVQ
701: SKWDNVRKGI CCLCSNSSID ALLYRCGHMS TCLKCAEKLI QRNGKCPMCR APVIEAIRAF SIQ
101: FQDWMSTGVK DHSQSLSVSH KNNCLGAPWL GENERERVRI IREWVKINIQ QSGAGSPRDD GAADIGSQFE QVRDGSLFNH SENGERKSVR MYCGRKALLD
201: LLMKFQMERQ REIQGLLECK PVSNFTYRNR IQSLLKGRFL RNERLMTSDE RTTSDAASEL GILRQSHTVS YLRKEILSRL VDNARNSTKD VQLNASSTDD
301: LNRHHRSEQS QSNNEQEIID ESYDQSELDS EERETDGSHV VGNSESITSE EVNQQNSVDQ IAEHSNQIAA VESGSRGHVR EDHEPFHDND APRSEASDTH
401: EVYDHSHGLI SSTFEDYVWH VLSSQAEDPQ DVVTDHEERN LRQSEAPYEL VIEHGKSKQM SSSEHNETTN NTTEDMSGSW QEDSANHWYP ESSENDTEEQ
501: IYEQEQHEDW QSNDWLDMPS SQNAGSMRRV DSFYMPDDDS VYNIELRELL SRRRVSNLLQ SGFRESLDQL IQSYVERQGH ASEWYMDGTS SSPDDTDHEL
601: LQEYDNQDGP QINSESNPFA MTSLHVEPSL QLIGTDWEVI HELRNDMVRL QQRMDNMQRM FEKCMEMQVE LQRTVHQNVS AALNRYACST DIDACEDSVQ
701: SKWDNVRKGI CCLCSNSSID ALLYRCGHMS TCLKCAEKLI QRNGKCPMCR APVIEAIRAF SIQ
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
Arabidopsis Description
Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.