CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30548	Soybean	nucleus	85.01	84.42
KRH66429	Soybean	nucleus	18.5	74.18
KRH26545	Soybean	nucleus	53.16	57.04
KRH22786	Soybean	nucleus	55.74	56.07
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	45.08	47.41
CDY04520	Canola	cytosol, plastid	35.83	45.13
Bra011990.1-P	Field mustard	nucleus, plastid	36.07	40.31
KRG92104	Soybean	nucleus	39.7	39.98
KRH34682	Soybean	nucleus	39.7	39.93
AT2G27950.2	Thale cress	nucleus	39.23	39.93
Solyc11g066500.1.1	Tomato	nucleus, plastid	34.43	36.3
PGSC0003DMT400001109	Potato	mitochondrion	33.96	33.56
PGSC0003DMT400018447	Potato	nucleus	29.86	33.42
Solyc06g074760.1.1	Tomato	nucleus	29.39	32.77
KRH12155	Soybean	nucleus	7.61	7.09
KRH37161	Soybean	nucleus	7.61	7.05

Protein Annotations

EntrezGene:100804184	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02007207	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G082400
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7LTQ2	EnsemblPlants:KRH25125	ProteinID:KRH25125	ProteinID:KRH25125.1	ProteinID:KRH25126.1
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	SUPFAM:SSF57850	UniParc:UPI00023D06A0
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:6534333..6540620

Molecular Weight (calculated)

97170.1 Da

IEP (calculated)

4.444

GRAVY (calculated)

-0.941

Length

854 amino acids

Sequence
(BLAST)

001: MAIAGLHSVS VLDSSFLRDS RSQSSGRGGD GRRGTTRSSS LLQMWREIEE EHVVNQVQGR PDEVPIEQRR DGLVADPSQD IQERRQQHVL EDAVLGENES
101: ETWSQSQSQN ESHDGNEDLN NSSCDNSSDL GEVERERVRQ IFREWMNSGA RDHASNISGR NNGSRGEWLG ETEQERVRVI REWVQMSSQQ RSVSSGENRE
201: EPSAEIDMQI ERVRDGLVVN QIGGQTEHTR RGIRKLCGRQ AMLDMLKKAE RERQREIQEL LNHQAVSQFP YRNRIQALLR GRFLRNDRPV DNNKPLSVAE
301: SELGFLRRRQ TVSGLREGFF CRKENSGCSQ ATSNADTSSN VEIDFNTNEQ MGSSSSHIVP IVHPEQSDPN HRGSNRLGVS GSQNCVRGTA CENLDWQEST
401: AQADQLQHLP IESLDCQSSF SACVERGDNP EQNVDVMPTE DAANEITQQS LRIEDSEHSN NQEFSEVHNE PSELGGINNS QNNSSNYNIH MEDNVVDDVN
501: WNESGALEGE QPEEVFENEG SEWYQNNTEW RNSTEENVDD NQLSNTANEW PDNSLANEDG ENSRLQESHE VWQEDGGFQE AVENWLGGPS DHESAPVGRI
601: RGFYFPEDDN VYSVELRELL NRRSVSNLLR SSFRESLDQL IQSYVERQGH ANIDWEFQET TPSSASVEQD LEQHSRDQIV GQEEVTVSPL NLPSLPIPPP
701: LPIWDQHHHR DNWSQNDINN QRLVIDWEII NDLRIDMARL QQRMNNMQRM LEACMDMQLE LQRSIRQEVS AALNRSAGSS GIHDCESPED KSKWECVRKG
801: LCCICCESNI DSLLYRCGHL CTCSKCANEL LQSRRNCPMC QAPVVEVIRA YSIQ

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.