Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018447 | Potato | nucleus | 66.19 | 66.45 |
| Solyc11g066500.1.1 | Tomato | nucleus, plastid | 38.9 | 36.79 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 35.77 | 33.74 |
| CDY04520 | Canola | cytosol, plastid | 29.63 | 33.48 |
| KRH26545 | Soybean | nucleus | 33.16 | 31.91 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 17.1 | 30.47 |
| Solyc11g007910.1.1 | Tomato | nucleus | 33.29 | 30.43 |
| KRH22786 | Soybean | nucleus | 32.9 | 29.68 |
| KRH25125 | Soybean | nucleus | 32.77 | 29.39 |
| KRH30548 | Soybean | nucleus | 32.11 | 28.6 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 27.68 | 27.75 |
| AT2G27950.2 | Thale cress | nucleus | 29.5 | 26.94 |
| Solyc03g071670.1.1 | Tomato | nucleus | 13.32 | 22.82 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 9.4 | 7.64 |
| Solyc02g082100.2.1 | Tomato | vacuole | 7.7 | 5.47 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K4C9J3 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc06g074760.1 | EnsemblPlants:Solyc06g074760.1.1 |
| UniParc:UPI0002766792 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:-:46301276..46305068
Molecular Weight (calculated)
88020.8 Da
IEP (calculated)
4.381
GRAVY (calculated)
-0.902
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRNLEGEHG VNNSRARCGE GKMQQKTDIE NSNSTGPILL YDQQIVMGIS SFEGANEGCN GRVASQSLNV LVNESEDNRS ILSDQSSDLG EIERERVRQV
101: FQEWMSTSEK DHSQSLSVSH KNNCSGAPWL GENERERVRI IREWVKINIQ QNDAGYPRDE GTADIDSQFE QVRDGSLVNH SENGERKPVR MYCSRKSLLE
201: LLMKFQMERQ REIQGLLECK PVSNFTYHNR IQSLLKGRFL RNERLMTSDE RTTSDAASEL SLLRQSQTVS YLRKEILSRL VDNARSSTKN VQLNASSTDD
301: LNHHHRSEQS QSNNVQEIID ESYDQSELDS EERETYGSHV FGNSESITSE EVNQQNSIDQ IAEHSNQIAA VESGSRGHVR EDHEPFHDND APRSEASDTH
401: EVYDHFHGLR SSTFEDYVWQ VLSSQAEDPQ DVVTDHEESN LRQSEVPYEL VIEHGESEQM SSSEHNETTN DTTEEMGGSW QEGAANHWYP YSSENDTEEQ
501: IYEQEQQEDW QSNDWLDMPS NQNAGSMRRV DSFYMPDDDN VYNIELRELL SRRRVSNLLQ SGFRESLDQL IQSYVERQGH ASEWYMDGIS SSPDDMEYEL
601: LQEYDNQDGP QINSESNSFA VASLHVEPSL QLIGTDWEII HELRNDMVRL QQRMDNMQKM FEKCMEMQVE LQRTVHQNVS AALNRYACST DIDACEDSVL
701: NDESKWDNVR KGICCLCPNS SIDALLYRCG HMCTCLKCAE KLVQWNGKCP MCQVPVNEAI RAFSIQ
101: FQEWMSTSEK DHSQSLSVSH KNNCSGAPWL GENERERVRI IREWVKINIQ QNDAGYPRDE GTADIDSQFE QVRDGSLVNH SENGERKPVR MYCSRKSLLE
201: LLMKFQMERQ REIQGLLECK PVSNFTYHNR IQSLLKGRFL RNERLMTSDE RTTSDAASEL SLLRQSQTVS YLRKEILSRL VDNARSSTKN VQLNASSTDD
301: LNHHHRSEQS QSNNVQEIID ESYDQSELDS EERETYGSHV FGNSESITSE EVNQQNSIDQ IAEHSNQIAA VESGSRGHVR EDHEPFHDND APRSEASDTH
401: EVYDHFHGLR SSTFEDYVWQ VLSSQAEDPQ DVVTDHEESN LRQSEVPYEL VIEHGESEQM SSSEHNETTN DTTEEMGGSW QEGAANHWYP YSSENDTEEQ
501: IYEQEQQEDW QSNDWLDMPS NQNAGSMRRV DSFYMPDDDN VYNIELRELL SRRRVSNLLQ SGFRESLDQL IQSYVERQGH ASEWYMDGIS SSPDDMEYEL
601: LQEYDNQDGP QINSESNSFA VASLHVEPSL QLIGTDWEII HELRNDMVRL QQRMDNMQKM FEKCMEMQVE LQRTVHQNVS AALNRYACST DIDACEDSVL
701: NDESKWDNVR KGICCLCPNS SIDALLYRCG HMCTCLKCAE KLVQWNGKCP MCQVPVNEAI RAFSIQ
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
Arabidopsis Description
Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.