Factsheet for Solyc10g005220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067920.2.1
Solyc03g078400.2.1
Solyc04g009950.2.1
Solyc05g052960.2.1
Solyc06g074190.2.1
Solyc07g008370.2.1
Solyc07g054690.1.1
Solyc08g074980.2.1
Solyc09g098390.2.1
Solyc10g079430.1.1
Solyc10g083190.1.1
Solyc11g005330.1.1
Solyc11g066420.1.1
Solyc11g068720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30860.1	Solyc04g009950.2.1	AT1G09770.1	21798944
AT1G30860.1	Solyc08g074980.2.1	AT1G61590.1	21798944
AT1G30860.1	Solyc07g008370.2.1	AT2G01250.1	21798944
AT1G30860.1	Solyc05g052960.2.1	AT2G39760.1	21798944
AT1G30860.1	Solyc09g098390.2.1	AT2G43370.1	21798944
AT1G30860.1	Solyc02g067920.2.1	AT3G01690.1	21798944
AT1G30860.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT1G30860.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT1G30860.1	Solyc07g054690.1.1	AT4G28230.1	21798944
AT1G30860.1	Solyc03g078400.2.1	AT5G09810.1	21798944
AT1G30860.1	Solyc11g005330.1.1	AT5G09810.1	21798944
AT1G30860.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT1G30860.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT1G30860.1	Solyc11g066420.1.1	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029374	Potato	nucleus, plastid	60.4	57.71
Bra005381.1-P	Field mustard	nucleus	19.75	28.7
CDY31650	Canola	nucleus, plastid	19.0	27.8
AT2G34920.2	Thale cress	nucleus	18.47	26.13
Solyc02g082100.2.1	Tomato	vacuole	29.51	25.79
VIT_01s0010g00340.t01	Wine grape	nucleus	19.53	25.24
Bra021939.1-P	Field mustard	nucleus, plastid	16.45	24.88
GSMUA_Achr4P33210_001	Banana	nucleus	14.33	24.86
Bra039871.1-P	Field mustard	nucleus	18.47	24.79
CDX84276	Canola	endoplasmic reticulum, extracellular	17.52	24.37
CDY52188	Canola	nucleus	17.3	23.8
CDY12454	Canola	nucleus	16.24	23.72
CDY02344	Canola	cytosol	17.3	23.69
Bra023148.1-P	Field mustard	nucleus	17.52	23.4
CDY09519	Canola	nucleus	17.2	22.59
AT1G30860.1	Thale cress	cytosol	17.41	22.47
KRH37161	Soybean	nucleus	20.91	21.37
KRH12155	Soybean	nucleus	20.59	21.16
GSMUA_Achr7P00390_001	Banana	nucleus	15.5	20.08
HORVU2Hr1G048520.1	Barley	plastid	13.38	19.6
CDX96975	Canola	cytosol	14.12	19.36
TraesCS2B01G251300.1	Wheat	nucleus, plastid	14.33	18.39
CDY50063	Canola	cytosol	21.13	18.11
Zm00001d021532_P001	Maize	cytosol, plastid	14.76	17.98
AT5G44690.1	Thale cress	nucleus	12.63	17.98
TraesCS2D01G233500.1	Wheat	cytosol, plastid	14.44	17.97
TraesCS2A01G229600.2	Wheat	nucleus, plastid	14.01	17.86
EER99396	Sorghum	plastid	14.54	17.75
Os07t0499800-01	Rice	nucleus	13.69	17.15
Zm00001d006417_P002	Maize	plastid	10.4	16.7
CDY14941	Canola	nucleus	10.93	16.59
AT4G20160.2	Thale cress	cytosol	21.02	16.32
CDX78978	Canola	cytosol	19.53	16.25
Bra013447.1-P	Field mustard	nucleus	20.28	15.45
Solyc03g071670.1.1	Tomato	nucleus	5.41	11.41
Solyc06g074760.1.1	Tomato	nucleus	7.64	9.4
Solyc11g007910.1.1	Tomato	nucleus	7.43	8.35
Solyc11g066500.1.1	Tomato	nucleus, plastid	6.26	7.28
Solyc03g071680.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	2.34	5.12
Os03t0107500-00	Rice	plasma membrane	1.59	4.11

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CX55	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10044	PANTHER:PTHR10044:SF103	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc10g005220.2	EnsemblPlants:Solyc10g005220.2.1	UniParc:UPI000276C557
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:174813..180475

Molecular Weight (calculated)

105737.0 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.859

Length

942 amino acids

Sequence
(BLAST)

001: MASSQVEIAS SSPFGYVLNN RCCGTSTRDS NSFNQNFKNL VQSHLHSCKA FPSDSCENSQ NNVDLFECKK TEFGGKNQES CGGGVSSLVR KWKDIETDSK
101: SLNLVHNYEN LGFVCDESCS IVMKSECGWE SDDKTDISKD SDSDVKESER LGVADIIKKL KFDNGANVVA AAAVNGGSPL PRVRTSSIKD HSEGQRCNFS
201: PVLSSPRFIR GRQAFSDLLL QMDRDRKREL EGLVERKAVS KFQQRGRIQA LLRVRLIRHG AEIRGGHSVK NSASESNKSK HSAIMHLREK FNTVGQHGLA
301: VSRNTSKEVA ESIHESGSLP STPNRQHKEN SHRDFKSLRS HQRELGRSNS AKIGTGFSLH QQKEEDPLKG LVKERARLQP GVLADSICTS ITLGDNTRDP
401: IPEQVSPRNM APSIQIGNRF SSHQQREGDR HKELVRERAE VQPGTASGEK AQDPCTAKEE SHHKPRNNHK EVVDNNPKVG TFCISNQPRE ENHYEELCKK
501: LNSRKMATSI QITNLSENQK EMAKKSEGSC ILNQHDMNLT SLPSYTCQAQ SLHDIPEKAS RGNTSSEASH SNLLDFVEAG RPPKHRDENK QLPGTSDCTN
601: PQSDLEEEAT NQCLVESYSG SVSDYSLTTS GWDELQSNYQ QDNEDWISYI SRPRKEWEGL RQERYQEMLD PFSRNHDIQQ LLHRKSVSVF LTSGLREQID
701: RIMVSRSQQL PNARISHVEK PVSAQVAEDE EEEVEQNGKE EVEVEWGYND DSEDDSIPSR PQYDEPEALI LQNTSSQSWN TNPYQEVTDD SYHFPSPSSL
801: QSQSSNIYSQ PCSSSTGHPS TEMELIYEMR GHMEQLHQEI FEIRRSMKSC MNMQMKLQHS IKQDVAAAIS QLGQKSIGNS DKKGSNKGKC CICYEEPVDS
901: LLYRCGHMCT CFLCAHELIS GIGKCPICQA PIMDVVRAYA HS

Best Arabidopsis Sequence Match ( AT2G34920.2 )
(BLAST)

001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT

Arabidopsis Description

EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.