Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070376 | Potato | nucleus | 97.73 | 94.79 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 71.24 | 69.18 |
| KRG92104 | Soybean | nucleus | 68.38 | 67.57 |
| KRH34682 | Soybean | nucleus | 68.02 | 67.14 |
| Solyc03g071670.1.1 | Tomato | nucleus | 35.56 | 66.67 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 32.1 | 62.56 |
| AT5G04460.1 | Thale cress | nucleus | 63.25 | 61.41 |
| CDX70223 | Canola | cytosol | 53.1 | 57.42 |
| CDY44857 | Canola | nucleus | 52.51 | 56.63 |
| Bra009452.1-P | Field mustard | nucleus | 56.21 | 56.27 |
| Bra029846.1-P | Field mustard | nucleus | 49.16 | 53.3 |
| CDY41355 | Canola | nucleus | 47.14 | 52.46 |
| CDY08599 | Canola | nucleus | 45.11 | 52.28 |
| Bra034121.1-P | Field mustard | nucleus | 49.76 | 52.12 |
| CDY00948 | Canola | cytosol | 43.79 | 50.9 |
| Solyc11g066500.1.1 | Tomato | nucleus, plastid | 33.29 | 34.44 |
| Solyc06g074760.1.1 | Tomato | nucleus | 30.43 | 33.29 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 8.35 | 7.43 |
| Solyc02g082100.2.1 | Tomato | vacuole | 8.23 | 6.4 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K4D552 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc11g007910.1 | EnsemblPlants:Solyc11g007910.1.1 |
| UniParc:UPI000276A5B6 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr11:-:2134146..2140883
Molecular Weight (calculated)
96237.5 Da
IEP (calculated)
5.401
GRAVY (calculated)
-1.052
Length
838 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDVQQQMQQ KPESTGDDVR SEFERGLEEL MCGHLDECMS YASCSSVRNT EDEDEESDQL VRRRRRSDLE GDDLAESSAA RRRHSRILSR WAARQAQEMI
101: TTIERRNRES ELMALAGLHT VSMLDSSFLR ESQSPTSRRQ GGDSERINTR ASNILQMWRE LEDEHVLNRA RERVRERLTQ RRSMDSNTNV SSANMSESRE
201: TDNQGSLVDA SESENEYGTW SHDPIGPQND HRDHENSSRE PSPDLGEVER ERVRQIVRGW MESGISDHSS NVSQPQRNGG PRGEWLGETE RERVRIVREW
301: VQMTSQQRGA RGSQREEQST RLSSQGDRAR EGSVVDHEEA QPEHIRRDML RLRGRQALLD LLMRIERERQ RELQGLLEHR AVSDFAHRNR IQSLLRGRFL
401: HERPAEEERP PSIAASELVQ LRQRNTVSGL REGFRSRLEN IVRGQEVEDE NGEQMQTSEL ESTVHQLPDR SENSGQSMNQ QPPPNQGRDR VEAVVEAEEA
501: IQQRNLTSND SNVWTDETTE NVSRNWQENP STGRSLETTA YVGRAEHRFP ENQEVWHEDA SREAVESWSA GPSDPPRMRR PVPIRRVSRF HPPDDDNVYS
601: MELRELLSRR SVSNLLRSGF RESLDQLIQS YVERQGRSPI DWDLHRNLPI PVSPEMGPDQ HNDDQNDDQQ DGVGRPSIVL PSPPVPPPQP LWHQDLHHSS
701: WPRHAVHRSE LEWEMINELR ADMARLQQGM NHMQRMLESC MDMQLELQRS VRQEVSAALN RSAGGQGAAE TSVDGSKWGN VKKGTCCVCC DSHIDSLLYR
801: CGHMCTCSKC ANELVRGGGK CPLCRAPIVE VIRAYSIL
101: TTIERRNRES ELMALAGLHT VSMLDSSFLR ESQSPTSRRQ GGDSERINTR ASNILQMWRE LEDEHVLNRA RERVRERLTQ RRSMDSNTNV SSANMSESRE
201: TDNQGSLVDA SESENEYGTW SHDPIGPQND HRDHENSSRE PSPDLGEVER ERVRQIVRGW MESGISDHSS NVSQPQRNGG PRGEWLGETE RERVRIVREW
301: VQMTSQQRGA RGSQREEQST RLSSQGDRAR EGSVVDHEEA QPEHIRRDML RLRGRQALLD LLMRIERERQ RELQGLLEHR AVSDFAHRNR IQSLLRGRFL
401: HERPAEEERP PSIAASELVQ LRQRNTVSGL REGFRSRLEN IVRGQEVEDE NGEQMQTSEL ESTVHQLPDR SENSGQSMNQ QPPPNQGRDR VEAVVEAEEA
501: IQQRNLTSND SNVWTDETTE NVSRNWQENP STGRSLETTA YVGRAEHRFP ENQEVWHEDA SREAVESWSA GPSDPPRMRR PVPIRRVSRF HPPDDDNVYS
601: MELRELLSRR SVSNLLRSGF RESLDQLIQS YVERQGRSPI DWDLHRNLPI PVSPEMGPDQ HNDDQNDDQQ DGVGRPSIVL PSPPVPPPQP LWHQDLHHSS
701: WPRHAVHRSE LEWEMINELR ADMARLQQGM NHMQRMLESC MDMQLELQRS VRQEVSAALN RSAGGQGAAE TSVDGSKWGN VKKGTCCVCC DSHIDSLLYR
801: CGHMCTCSKC ANELVRGGGK CPLCRAPIVE VIRAYSIL
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.