Factsheet for Solyc03g071680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66429	Soybean	nucleus	20.93	42.25
Os09t0570500-01	Rice	nucleus	38.84	37.03
Zm00001d019765_P001	Maize	nucleus	30.93	35.56
Solyc11g007910.1.1	Tomato	nucleus	62.56	32.1
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	40.7	31.93
HORVU4Hr1G086680.2	Barley	mitochondrion	29.3	28.97
GSMUA_Achr11P...	Banana	nucleus	46.05	28.01
GSMUA_Achr1P17370_001	Banana	nucleus	44.42	27.44
GSMUA_Achr1P00380_001	Banana	nucleus	41.86	27.03
GSMUA_AchrUn_...	Banana	nucleus	47.21	26.33
GSMUA_Achr2P03990_001	Banana	nucleus	41.86	25.6
KXG35138	Sorghum	nucleus	41.63	25.57
TraesCS4D01G003000.2	Wheat	nucleus	41.63	25.14
GSMUA_Achr5P12430_001	Banana	nucleus	42.33	24.83
HORVU6Hr1G092920.1	Barley	cytosol	36.98	24.77
TraesCS4A01G311200.1	Wheat	nucleus	39.3	23.64
TraesCS4B01G003100.1	Wheat	nucleus	39.07	23.63
GSMUA_Achr8P11220_001	Banana	nucleus	40.93	23.37
CDX71406	Canola	cytosol	29.77	22.9
EES06049	Sorghum	nucleus	39.07	22.02
OQU93435	Sorghum	nucleus	33.26	21.9
TraesCS6B01G449800.2	Wheat	nucleus	37.91	21.22
TraesCS6A01G405400.1	Wheat	nucleus	37.44	21.02
TraesCS6D01G389100.1	Wheat	nucleus	37.44	21.02
TraesCS5A01G529500.1	Wheat	plastid	30.23	18.11
TraesCS4D01G354300.1	Wheat	plastid	29.53	17.91
Solyc06g074760.1.1	Tomato	nucleus	30.47	17.1
Solyc11g066500.1.1	Tomato	nucleus, plastid	31.86	16.91
Solyc03g071670.1.1	Tomato	nucleus	2.79	2.68
Solyc10g005220.2.1	Tomato	nucleus, plastid	5.12	2.34
Solyc02g082100.2.1	Tomato	vacuole	4.42	1.76

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR013083	UniProt:K4BHJ8	PFAM:PF13920	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc03g071680.1	EnsemblPlants:Solyc03g071680.1.1	UniParc:UPI0002767BD5	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr3:+:18320038..18322555

Molecular Weight (calculated)

48804.6 Da

IEP (calculated)

6.001

GRAVY (calculated)

-0.969

Length

430 amino acids

Sequence
(BLAST)

001: MGCDPFISTR QGFRSRLENI VRGQVSTNSE SSSNSGNGGL RSNQAHANPL QEVQNENVEQ QQSREQEHIT PQFPDHRESF DSSTTGQATT WPVSPNQGRS
101: QVEPVVEAYG ANQQDATSNE QTHGTMENTS GNWPQNQPIA WPPETTGDMN RDEHRLPENN EVWHEDGSRE AVENPSLGPS NPPRMRRSVP YRRISRFHPP
201: DDDNVYSMEL RELLSRRSVS NLLHSCFRES LDHLIQSYVE RQGRDPIDWD LHRNLPIPNS TERDPDQQNV AQPEGISRPS HVQPSPPVPP PQPLWHQDLH
301: HSSWPCHTVH RSELEWEMMN DLRMDMAKLQ QGVNHMQKML EACMDMQLEL QRSVRQEVSA ALNRSADGQE VVETSADGSK RGHVKRVSYT LQCGHMCTCY
401: KCANELVRGG GKCPLCRAPI VEVIRAYSIL

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.