Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019765_P001 | Maize | nucleus | 45.45 | 54.81 |
| KRH66429 | Soybean | nucleus | 18.4 | 38.97 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 37.03 | 38.84 |
| Os02t0823300-01 | Rice | nucleus | 47.23 | 28.25 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 48.34 | 25.26 |
| CDX71406 | Canola | cytosol | 31.04 | 25.04 |
| PGSC0003DMT400070376 | Potato | nucleus | 45.9 | 23.96 |
| PGSC0003DMT400043571 | Potato | nucleus | 43.46 | 22.82 |
| Bra009452.1-P | Field mustard | nucleus | 42.13 | 22.7 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 40.35 | 22.41 |
| Bra029846.1-P | Field mustard | nucleus | 38.14 | 22.25 |
| AT5G04460.1 | Thale cress | nucleus | 42.13 | 22.02 |
| Bra034121.1-P | Field mustard | nucleus | 39.02 | 22.0 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 36.81 | 19.21 |
| PGSC0003DMT400018447 | Potato | nucleus | 30.6 | 18.09 |
| AT2G27950.2 | Thale cress | nucleus | 32.15 | 17.28 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 27.27 | 16.1 |
| Os03t0107500-00 | Rice | plasma membrane | 5.99 | 7.4 |
| Os07t0499800-01 | Rice | nucleus | 3.77 | 2.26 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | ProteinID:BAF25901.1 | ProteinID:BAT09514.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 |
| EnsemblPlantsGene:Os09g0570500 | EnsemblPlants:Os09t0570500-01 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 |
| UniProt:Q0IZG4 | SUPFAM:SSF57850 | UniParc:UPI0000DD98AA | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
RING finger protein OsRFPHC-16, RING-HC protein 16Zinc finger, RING-type domain containing protein. (Os09t0570500-01)
Coordinates
chr9:+:22774959..22777585
Molecular Weight (calculated)
51759.9 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.995
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: HQRTRLNIGL QQIEGTATVS ESGSNTPSIA EGLYEPHSQA ESWQDDLEQE RRDWEQFSHA ITGEESEINW HENTYNGSSH EGTEVEGGQD AHIPESHDEL
101: ASDNLPPQSH GEQQDNSHLP EENEELHDSD LQQSRGEWNE GSNPFIPTEV HNEWHSDDHF QGVNEEWHDD DESNDTADNW HDDNSDQPID HDSALIRRAN
201: TFVPADDDNV YSTELRELLS RRSVSNLLHS AFRENLDRLI RSYVERQGRA PLSWDLEGAP PAPDSPEQSQ EQHRDEEEQE LHDNVVRPPL VIPPPPIPPR
301: QPLWHSELHR NNWIRQNIHR SDIEWEAIND LRADMARLQQ GMSHMQRMLE ACMDMQLELQ RSVRQEVSAA LNRFIGEQGE SKETIDDGSK WIHVRKGTCC
401: ICCDTPIDSL LYRCGHMCTC SKCANELVRS GGKCPLCRAP IIEVIRAYFI M
101: ASDNLPPQSH GEQQDNSHLP EENEELHDSD LQQSRGEWNE GSNPFIPTEV HNEWHSDDHF QGVNEEWHDD DESNDTADNW HDDNSDQPID HDSALIRRAN
201: TFVPADDDNV YSTELRELLS RRSVSNLLHS AFRENLDRLI RSYVERQGRA PLSWDLEGAP PAPDSPEQSQ EQHRDEEEQE LHDNVVRPPL VIPPPPIPPR
301: QPLWHSELHR NNWIRQNIHR SDIEWEAIND LRADMARLQQ GMSHMQRMLE ACMDMQLELQ RSVRQEVSAA LNRFIGEQGE SKETIDDGSK WIHVRKGTCC
401: ICCDTPIDSL LYRCGHMCTC SKCANELVRS GGKCPLCRAP IIEVIRAYFI M
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.