Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0570500-01 | Rice | nucleus | 7.4 | 5.99 |
| Os02t0823300-01 | Rice | nucleus | 9.86 | 4.77 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 4.38 | 2.57 |
| CDY12454 | Canola | nucleus | 4.38 | 2.48 |
| AT2G34920.2 | Thale cress | nucleus | 4.11 | 2.25 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 4.11 | 2.22 |
| CDY02344 | Canola | cytosol | 4.11 | 2.18 |
| CDY31650 | Canola | nucleus, plastid | 3.84 | 2.17 |
| Bra005381.1-P | Field mustard | nucleus | 3.84 | 2.16 |
| CDY14941 | Canola | nucleus | 3.56 | 2.09 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 4.11 | 2.06 |
| AT1G30860.1 | Thale cress | cytosol | 4.11 | 2.05 |
| CDY52188 | Canola | nucleus | 3.84 | 2.04 |
| Bra039871.1-P | Field mustard | nucleus | 3.84 | 1.99 |
| CDY09519 | Canola | nucleus | 3.84 | 1.95 |
| Os07t0499800-01 | Rice | nucleus | 3.84 | 1.86 |
| CDX96975 | Canola | cytosol | 3.29 | 1.75 |
| KRH37161 | Soybean | nucleus | 4.38 | 1.74 |
| Bra023148.1-P | Field mustard | nucleus | 3.29 | 1.7 |
| KRH12155 | Soybean | nucleus | 4.11 | 1.64 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 4.11 | 1.59 |
| CDX78978 | Canola | cytosol | 4.38 | 1.41 |
| CDY50063 | Canola | cytosol | 4.11 | 1.36 |
| AT5G44690.1 | Thale cress | nucleus | 2.47 | 1.36 |
| Bra013447.1-P | Field mustard | nucleus | 4.38 | 1.29 |
| PGSC0003DMT400035458 | Potato | nucleus | 3.56 | 1.26 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 3.29 | 1.22 |
| Solyc02g082100.2.1 | Tomato | vacuole | 3.56 | 1.21 |
| AT4G20160.2 | Thale cress | cytosol | 3.56 | 1.07 |
Protein Annotations
| EntrezGene:107276254 | MapMan:35.2 | UniProt:A0A0P0VS01 | ProteinID:BAS81883.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:Os03g0107500 |
| EnsemblPlants:Os03t0107500-00 | PANTHER:PTHR33065 | PANTHER:PTHR33065:SF21 | TMHMM:TMhelix | UniParc:UPI000393BA6A | RefSeq:XP_015629338.1 |
Description
RING finger proteinConserved hypothetical protein. (Os03t0107500-00)
Coordinates
chr3:+:457359..459318
Molecular Weight (calculated)
41577.1 Da
IEP (calculated)
4.278
GRAVY (calculated)
-0.227
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVNYFWIWI YGMFSVYYVG YIILVYNYVF CCDRFAFIPC SSNSVQRYSA TKTDKNKSSD LIIQPQINDV TEESNQRPTD SSEINPTVGV FGEHYLFWTQ
101: HICQLSSHRD GTIYNNQLYW KNNYDIDVTN REETPVEPMR YSVATRCNPD LENCLCMTCQ MVQIFSLKLA HTSINSGPTQ LYGYIAARDH VDSMLNYVFN
201: RSRDDPIAVN QGSLIEMTGP KRGIALIPEC LFEFDMRIKT GEKEEDDLQL IDGMIELDEM RMPETPYTTR INGDSGSVDL CLANVSNGVE ATVEVVISEL
301: MVNGFDLSIS CVVSSSRYEY DESKEFQIFG GSIGEACGLR RFVLAVYLDT DAAEVEGRSE RVQWC
101: HICQLSSHRD GTIYNNQLYW KNNYDIDVTN REETPVEPMR YSVATRCNPD LENCLCMTCQ MVQIFSLKLA HTSINSGPTQ LYGYIAARDH VDSMLNYVFN
201: RSRDDPIAVN QGSLIEMTGP KRGIALIPEC LFEFDMRIKT GEKEEDDLQL IDGMIELDEM RMPETPYTTR INGDSGSVDL CLANVSNGVE ATVEVVISEL
301: MVNGFDLSIS CVVSSSRYEY DESKEFQIFG GSIGEACGLR RFVLAVYLDT DAAEVEGRSE RVQWC
0001: MGKPKGDAAR SKARPSSSSL AASLLPSGSA AAVGFGGYVG SSRFQTSLSN EDSASFLDLD SEVAQHLQRL SRKDPTTKIK ALASLSELVK QKQGKELLPI
0101: IPQWTFEYKK LILDYSRDVR RATHDVMTNV VTGAGRDIAP HLKSIMGPWW FSQFDLASEV SQAAKSSFQV GSSFGNSVFL VEAAFPAQEK RLHALNLCSA
0201: EIFAYLEENL KLTPQNLSDK SLASDELEEM YQQMISSSLV GLATLLDILL REPDNTGSAN INSESKLASK ARAVATSSAE KMFSSHKCFL NFLKSESPSI
0301: RSATYSLLSS FIKNVPEVFG EGDVRSLAPA LLGVFRENNP TCHSSMWEAV LLFSKKFPQS WVYLNVHKSV LNHLWQFLRN GCYGSPQVSY PALILFLEVM
0401: PAQSVESDKF FVNFFKNLLA GRSMCESSST DQLSLLRATT ECFLWGLRNA SRYCDVPNSI HDLQVDLIDK VLVKILWADF TELSKGSIPP NQRKSAENLG
0501: MGNSVSYLQE LGRCILEILS GINLLEQNLL SFFCKAVQES FLNMLQQGDL EIVAGSMRKM IDFLLLLERY SVLEGESWPL HQFMGPLLSK AFPWIRSSEL
0601: LDGVKLLSVS VSVFGPRKVV PVLIDDIETS TLLSVEKEKN MSPEKLIKVF QEIFIPWCMD GYDSSTAARQ DLLFSLLDDE CFTQQWSDVI SYVFNQQHQG
0701: FNNLAAMKML LEKARDEITK RSSGQELNQR IGSRPEHWHH TLIESTAISL VHSSSATTTS AVQFLCSVLG GSTQDSSISF VSRSSLVLIY RGILEKLLSF
0801: IKQSPLCSVN DTCSSLIVEA IAFDSSSSVD VIVVAKFAAE VIDGSFFSLK SLSQDATLLT TVLSSIFIID LENRMTSLVD NTLSESKEKR KDRNFVCDYV
0901: HAVCSKMDNQ FWKSINYDVR KSSASTLAQF LRSVVLLEDD LQPFELTLLC ASRMTEVLEY LSLDQSDEEN ICGLLLLESD AWPIWVSPSS SASIDTHGMP
1001: VQLCELRKSK SQRYVSFIDS LIMKLGIHRF IVGHKDHGFA SQAWLSVEIL CTWEWPGGKV QTSFLPNLVS FCKDEPSSGG LLNSIFDILL NGALVHVKDE
1101: EEGLGNMWVD FNNNIVDVVE PFLRALVSFL HILFKEDLWG EEEAMAAFKM ITDKLFIGEE TSKNCLRIIP YIMSIIISPL RTKVKSGGSG KDTLLPLEVL
1201: LRNWLERSLS FPPLVLWQSG EDIQDWFQLV ISCYPVSDKA EEAKELQRHL STEERTLLLD LFRKQKQDPG ASTVVTQLPA VQILLARLIM IAVSYCGNDF
1301: NEDDWDFVFS NLKRLIQSAV VVMEETSENV NDFISGVSSM EKEKENDTLE GLGHIVFISD PSINSAQNAL SAFSLLNALV NHKSVEGEDN LKSLADETWD
1401: PVKDRILEGV LRLFFCTGLT EAIAASYSPE AASIVASFRV DHLQFWELVA HLVVDSSPRA RDRAVRAVEF WGLSRGSISS LYAIMFSSNP IPSLQLAAYT
1501: VLSTEPISRL AIVADLNAPL NDESLNDQDS SNAGLPSEDK LLLRDEVSCM VEKLDHELLD TDLTAPERVQ TFLAWSLLLS NVNSLPSLTQ GRERLVQYIE
1601: KTANPLILDS LFQHIPLELY MGQSLKKKDG DIPSELSVVA SAATRAIITG SSLSTVESLW PIETGKMASL AGAIYGLMLR VLPAYVREWF SEMRDRSASS
1701: LIEAFTRTWC SPSLIKNELS QIKKADFNDE SFSVSISKAA NEVVATYTKD ETGMDLVIRL PVSYPLKPVD VNCAKSIGIS EAKQRKWLMS MQMFVRHQNG
1801: ALAEAIRIWK RNSDKEFEGV EDCPICYSVI HIGNHSLPRR ACVTCKYKFH KACLDKWFYT SNKKLCPLCQ SPC
0101: IPQWTFEYKK LILDYSRDVR RATHDVMTNV VTGAGRDIAP HLKSIMGPWW FSQFDLASEV SQAAKSSFQV GSSFGNSVFL VEAAFPAQEK RLHALNLCSA
0201: EIFAYLEENL KLTPQNLSDK SLASDELEEM YQQMISSSLV GLATLLDILL REPDNTGSAN INSESKLASK ARAVATSSAE KMFSSHKCFL NFLKSESPSI
0301: RSATYSLLSS FIKNVPEVFG EGDVRSLAPA LLGVFRENNP TCHSSMWEAV LLFSKKFPQS WVYLNVHKSV LNHLWQFLRN GCYGSPQVSY PALILFLEVM
0401: PAQSVESDKF FVNFFKNLLA GRSMCESSST DQLSLLRATT ECFLWGLRNA SRYCDVPNSI HDLQVDLIDK VLVKILWADF TELSKGSIPP NQRKSAENLG
0501: MGNSVSYLQE LGRCILEILS GINLLEQNLL SFFCKAVQES FLNMLQQGDL EIVAGSMRKM IDFLLLLERY SVLEGESWPL HQFMGPLLSK AFPWIRSSEL
0601: LDGVKLLSVS VSVFGPRKVV PVLIDDIETS TLLSVEKEKN MSPEKLIKVF QEIFIPWCMD GYDSSTAARQ DLLFSLLDDE CFTQQWSDVI SYVFNQQHQG
0701: FNNLAAMKML LEKARDEITK RSSGQELNQR IGSRPEHWHH TLIESTAISL VHSSSATTTS AVQFLCSVLG GSTQDSSISF VSRSSLVLIY RGILEKLLSF
0801: IKQSPLCSVN DTCSSLIVEA IAFDSSSSVD VIVVAKFAAE VIDGSFFSLK SLSQDATLLT TVLSSIFIID LENRMTSLVD NTLSESKEKR KDRNFVCDYV
0901: HAVCSKMDNQ FWKSINYDVR KSSASTLAQF LRSVVLLEDD LQPFELTLLC ASRMTEVLEY LSLDQSDEEN ICGLLLLESD AWPIWVSPSS SASIDTHGMP
1001: VQLCELRKSK SQRYVSFIDS LIMKLGIHRF IVGHKDHGFA SQAWLSVEIL CTWEWPGGKV QTSFLPNLVS FCKDEPSSGG LLNSIFDILL NGALVHVKDE
1101: EEGLGNMWVD FNNNIVDVVE PFLRALVSFL HILFKEDLWG EEEAMAAFKM ITDKLFIGEE TSKNCLRIIP YIMSIIISPL RTKVKSGGSG KDTLLPLEVL
1201: LRNWLERSLS FPPLVLWQSG EDIQDWFQLV ISCYPVSDKA EEAKELQRHL STEERTLLLD LFRKQKQDPG ASTVVTQLPA VQILLARLIM IAVSYCGNDF
1301: NEDDWDFVFS NLKRLIQSAV VVMEETSENV NDFISGVSSM EKEKENDTLE GLGHIVFISD PSINSAQNAL SAFSLLNALV NHKSVEGEDN LKSLADETWD
1401: PVKDRILEGV LRLFFCTGLT EAIAASYSPE AASIVASFRV DHLQFWELVA HLVVDSSPRA RDRAVRAVEF WGLSRGSISS LYAIMFSSNP IPSLQLAAYT
1501: VLSTEPISRL AIVADLNAPL NDESLNDQDS SNAGLPSEDK LLLRDEVSCM VEKLDHELLD TDLTAPERVQ TFLAWSLLLS NVNSLPSLTQ GRERLVQYIE
1601: KTANPLILDS LFQHIPLELY MGQSLKKKDG DIPSELSVVA SAATRAIITG SSLSTVESLW PIETGKMASL AGAIYGLMLR VLPAYVREWF SEMRDRSASS
1701: LIEAFTRTWC SPSLIKNELS QIKKADFNDE SFSVSISKAA NEVVATYTKD ETGMDLVIRL PVSYPLKPVD VNCAKSIGIS EAKQRKWLMS MQMFVRHQNG
1801: ALAEAIRIWK RNSDKEFEGV EDCPICYSVI HIGNHSLPRR ACVTCKYKFH KACLDKWFYT SNKKLCPLCQ SPC
Arabidopsis Description
E3 ubiquitin-protein ligase listerin [Source:UniProtKB/Swiss-Prot;Acc:Q9FGI1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.