CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005381.1-P	Field mustard	nucleus	88.66	88.12
CDX84276	Canola	endoplasmic reticulum, extracellular	60.56	57.61
AT2G34920.2	Thale cress	nucleus	45.19	43.69
CDY02344	Canola	cytosol	40.68	38.08
CDY12454	Canola	nucleus	35.71	35.66
CDY52188	Canola	nucleus	37.73	35.47
CDY09519	Canola	nucleus	39.44	35.43
GSMUA_Achr4P33210_001	Banana	nucleus	19.41	23.02
VIT_01s0010g00340.t01	Wine grape	nucleus	25.0	22.09
CDX96975	Canola	cytosol	23.14	21.69
KRH37161	Soybean	nucleus	29.04	20.28
Solyc10g005220.2.1	Tomato	nucleus, plastid	27.8	19.0
CDY14941	Canola	nucleus	18.32	19.0
KRH12155	Soybean	nucleus	26.86	18.87
CDY50063	Canola	cytosol	31.21	18.29
GSMUA_Achr7P00390_001	Banana	nucleus	20.5	18.16
HORVU2Hr1G048520.1	Barley	plastid	17.7	17.73
CDX78978	Canola	cytosol	30.43	17.31
EER99396	Sorghum	plastid	20.65	17.23
TraesCS2A01G229600.2	Wheat	nucleus, plastid	19.72	17.19
TraesCS2B01G251300.1	Wheat	nucleus, plastid	19.41	17.03
TraesCS2D01G233500.1	Wheat	cytosol, plastid	19.88	16.91
Os07t0499800-01	Rice	nucleus	19.72	16.89
PGSC0003DMT400029374	Potato	nucleus, plastid	25.78	16.84
PGSC0003DMT400035458	Potato	nucleus	26.4	16.43
Solyc02g082100.2.1	Tomato	vacuole	25.78	15.4
Zm00001d021532_P001	Maize	cytosol, plastid	18.32	15.27
Zm00001d006417_P002	Maize	plastid	13.35	14.65
CDY04520	Canola	cytosol, plastid	9.78	9.29
CDY08599	Canola	nucleus	10.09	8.99
CDY41355	Canola	nucleus	10.4	8.9
CDY44857	Canola	nucleus	10.25	8.49
CDX70223	Canola	cytosol	10.09	8.39
CDY00948	Canola	cytosol	9.32	8.32
CDX71406	Canola	cytosol	4.66	5.37
Os03t0107500-00	Rice	plasma membrane	2.17	3.84

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078GYX4	UniProt:A0A078GYX4	EnsemblPlants:CDY31650	ProteinID:CDY31650
ProteinID:CDY31650.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00050257001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF103	SUPFAM:SSF57850	UniParc:UPI0004EDFDEE	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA05g08970DBnaA05g08970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYX4]

Coordinates

chrLK032277:-:142416..144968

Molecular Weight (calculated)

73430.1 Da

IEP (calculated)

7.252

GRAVY (calculated)

-0.895

Length

644 amino acids

Sequence
(BLAST)

001: MASSQLEIAS LRSNFGCIIL RDRNQRQNNH DAVFKKKNKS RLGSPEKPRT GKGNNFSDST KRNDKRGGAS SLVQIWEARL NRSSTGNSSP IQEETNLSAP
101: STDGESESEN VSKNNDPTVE VESGALGTVP ESGESKWGRV AEIIRKLKLT AGDNVRAADV LNIKTPKQEK SSFRAVTCSP RLRGRQAFSD LLMRLERDRH
201: RELESLAGRN AVSKFSQRGR LQSMLRLRTL KRGLLIQDRH LSSAETPDLS RFEFGSTVLN LRERFGANAT SEAERKKRQE TTLETESMKP KDTTILLETS
301: SAERFSHRNH KIEEANSRKK ETEPKMSYRQ LQEALKRKID NTSPHTIVTL QEPRTPEKEM ANIVESRKNG THETPFLESQ ETSFVWEYQE EYEDEQSYYG
401: ETSNDWFTEI SRPRTYWEDL RKSRYLEVMN TRSDKDDICR LLERRTVSDF LQSELREKID KLMMSRVQTH PVQRIEEAGK EEQECDIGQG EDEDDEEVRD
501: DLSHTSSQLF APSPAGSWSS RDIGVSSTPD LSPLHTPQST EMEIISELRS QILQLQLDMS ELRDSVKTCL DVNATLQKSV HRENPLKRKC CVCNASQVET
601: LLYRCGHMCT CLRCANELQC NGGKCPICRA KILDVVRVFF DSST

Best Arabidopsis Sequence Match ( AT2G34920.2 )
(BLAST)

001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT

Arabidopsis Description

EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.