Factsheet for VIT_01s0010g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s1526g00010.t01
VIT_00s2416g00010.t01
VIT_00s2761g00010.t01
VIT_01s0150g00170.t01
VIT_02s0087g00270.t01
VIT_04s0044g00580.t01
VIT_05s0102g00080.t01
VIT_06s0061g00780.t01
VIT_06s0080g00930.t01
VIT_08s0007g02790.t01
VIT_08s0056g00160.t01
VIT_09s0054g00010.t01
VIT_09s0054g00030.t01
VIT_09s0054g00060.t01
VIT_09s0054g00090.t01
VIT_09s0054g00140.t01
VIT_09s0054g00190.t01
VIT_09s0054g00210.t01
VIT_11s0052g00290.t01
VIT_12s0057g00240.t01
VIT_13s0019g02260.t01
VIT_14s0036g00510.t01
VIT_14s0219g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30860.1	VIT_01s0150g00170.t01	AT1G01630.1	21798944
AT1G30860.1	VIT_14s0036g00510.t01	AT1G09770.1	21798944
AT1G30860.1	VIT_02s0087g00270.t01	AT1G61590.1	21798944
AT1G30860.1	VIT_00s1526g00010.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_00s2416g00010.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_00s2761g00010.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_09s0054g00010.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_09s0054g00030.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_09s0054g00060.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_09s0054g00090.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_09s0054g00140.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_09s0054g00190.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_09s0054g00210.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_11s0052g00290.t01	AT2G01250.1	21798944
AT1G30860.1	VIT_13s0019g02260.t01	AT2G39760.1	21798944
AT1G30860.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT1G30860.1	VIT_14s0219g00290.t01	AT3G01690.1	21798944
AT1G30860.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT1G30860.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT1G30860.1	VIT_12s0057g00240.t01	AT4G28230.1	21798944
AT1G30860.1	VIT_04s0044g00580.t01	AT5G09810.1	21798944
AT1G30860.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944
AT1G30860.1	VIT_06s0061g00780.t01	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P33210_001	Banana	nucleus	19.75	26.52
KRH37161	Soybean	nucleus	33.47	26.46
CDY12454	Canola	nucleus	22.91	25.89
AT2G34920.2	Thale cress	nucleus	23.59	25.83
Bra005381.1-P	Field mustard	nucleus	22.36	25.15
CDY31650	Canola	nucleus, plastid	22.09	25.0
CDY52188	Canola	nucleus	23.18	24.67
Bra021939.1-P	Field mustard	nucleus, plastid	20.85	24.4
KRH12155	Soybean	nucleus	30.32	24.1
CDX84276	Canola	endoplasmic reticulum, extracellular	21.95	23.63
CDY09519	Canola	nucleus	23.18	23.57
CDY02344	Canola	cytosol	22.22	23.55
Bra039871.1-P	Field mustard	nucleus	22.63	23.5
AT1G30860.1	Thale cress	cytosol	22.91	22.88
Bra023148.1-P	Field mustard	nucleus	22.09	22.84
GSMUA_Achr7P00390_001	Banana	nucleus	22.22	22.28
HORVU2Hr1G048520.1	Barley	plastid	19.2	21.77
Zm00001d006417_P002	Maize	plastid	17.28	21.47
CDX96975	Canola	cytosol	19.48	20.67
TraesCS2A01G229600.2	Wheat	nucleus, plastid	20.44	20.16
EER99396	Sorghum	plastid	21.26	20.08
TraesCS2B01G251300.1	Wheat	nucleus, plastid	20.03	19.89
TraesCS2D01G233500.1	Wheat	cytosol, plastid	20.3	19.55
Zm00001d021532_P001	Maize	cytosol, plastid	20.71	19.53
Solyc10g005220.2.1	Tomato	nucleus, plastid	25.24	19.53
PGSC0003DMT400029374	Potato	nucleus, plastid	25.65	18.97
Os07t0499800-01	Rice	nucleus	19.34	18.75
PGSC0003DMT400035458	Potato	nucleus	26.34	18.55
Solyc02g082100.2.1	Tomato	vacuole	25.65	17.35
AT5G44690.1	Thale cress	nucleus	14.54	16.01
CDY50063	Canola	cytosol	21.95	14.56
CDY14941	Canola	nucleus	12.21	14.33
CDX78978	Canola	cytosol	22.22	14.31
Bra013447.1-P	Field mustard	nucleus	23.46	13.84
AT4G20160.2	Thale cress	cytosol	22.63	13.6
VIT_13s0019g05390.t01	Wine grape	nucleus	12.07	10.2
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	9.33	8.37
Os03t0107500-00	Rice	plasma membrane	2.06	4.11

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB51140	ProteinID:CCB51140.1	UniProt:F6HGD9	EMBL:FN595754
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF103	SUPFAM:SSF57850
UniParc:UPI0002108D8E	ArrayExpress:VIT_01s0010g00340	EnsemblPlantsGene:VIT_01s0010g00340	EnsemblPlants:VIT_01s0010g00340.t01	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD

Description

No Description!

Coordinates

chr1:-:14854163..14859888

Molecular Weight (calculated)

82672.7 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.882

Length

729 amino acids

Sequence
(BLAST)

001: MASSQVEIAS SSPFGCVLRD HNRREPPCRD SNAQAAFHNN LKVFVRDHVR PSISIIPSDE NSHPPPAAFY CWIPQQQGIR HRRRSLSFRT NREEKSKDMS
101: GRESGIMDQW VTRQAQETVS TTERHTHEAQ LLSPSQFPPD HSPSQSSNSP DVPNLGASSL VQMWEARVSR SDSLNSLAVS RTNSGFSYTE IAEEPSSRPS
201: EVCEPAGERY DTHTNNGDSY PDWESERTAP SDQPLSSQGQ DSDAGENERV RVADIIRRLT SGKHRAQNSL MCCSDDNDHE QPVVTSPRLR GRQAYINLLT
301: QMEHDRQREL GRVADCQAVS RFPHRGRIQS MLRLRFLHQG MTVHDQLRPL SRGSELGPER FSTGVEHGSV TAQSCVPNSR SPPNNTLAFE NSPTSNQISE
401: DIHRQEVSTS EPQSTTSAEQ LMSYATEYVQ EDAGPSSDTW QGPSFEVGSL DSEEQETADR MTTLNNWDMN INAEEEEVGE LNLFGTHYDW FSEISRPRRY
501: WEDLRQAWYQ EMLESNSDNE EIRQLLERRR VSTFLASDFR ERMDQLMTSH LQQQLHPEGS QREVQSKEER GRQGISVVHQ SRNTSDHFNE DTSSLQLPSP
601: SLFRSGDLQE MDLIYDLRGQ MKQLHHEMAE LRKSINCCMN MQVKLQQFMK QKVSAASHSV GRQGKKSLNS APRKGNCCLC YEKKIDSLLY RCGHMCTCLK
701: CAHELQSSTG KCPICQASIV DVVQAYADA

Best Arabidopsis Sequence Match ( AT2G34920.2 )
(BLAST)

001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT

Arabidopsis Description

EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.