Factsheet for VIT_08s0007g02790.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0150g00170.t01
VIT_02s0012g00850.t01
VIT_03s0091g00480.t01
VIT_04s0008g04220.t01
VIT_04s0023g02110.t01
VIT_05s0020g00690.t01
VIT_05s0020g01570.t01
VIT_05s0102g00080.t01
VIT_07s0141g00610.t01
VIT_08s0040g00890.t01
VIT_09s0002g00720.t01
VIT_13s0067g03220.t01
VIT_14s0219g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11590.1	VIT_01s0150g00170.t01	AT1G01630.1	21798944
AT3G11590.1	VIT_02s0012g00850.t01	AT1G31870.1	21798944
AT3G11590.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT3G11590.1	VIT_09s0002g00720.t01	AT1G54060.1	21798944
AT3G11590.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT3G11590.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT3G11590.1	VIT_14s0219g00290.t01	AT3G01690.1	21798944
AT3G11590.1	VIT_05s0020g00690.t01	AT3G06430.1	21798944
AT3G11590.1	VIT_04s0023g02110.t01	AT3G50910.1	21798944
AT3G11590.1	VIT_08s0040g00890.t01	AT3G56680.1	21798944
AT3G11590.1	VIT_05s0020g01570.t01	AT4G15730.1	21798944
AT3G11590.1	VIT_04s0008g04220.t01	AT4G32660.1	21798944
AT3G11590.1	VIT_13s0067g03220.t01	AT5G05190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96225	Soybean	nucleus	70.06	70.38
KRH67971	Soybean	plastid	69.6	69.39
CDY01038	Canola	plastid	58.36	62.95
AT3G11590.1	Thale cress	plastid	59.27	62.7
Bra034827.1-P	Field mustard	plastid	58.05	62.22
CDY08511	Canola	plastid	57.9	61.95
PGSC0003DMT400072353	Potato	plastid	60.94	61.22
Solyc10g083190.1.1	Tomato	plastid	60.18	59.91
VIT_06s0080g00930.t01	Wine grape	plastid	58.36	58.9
Bra001412.1-P	Field mustard	nucleus	30.7	58.21
CDX73866	Canola	cytosol	30.85	55.01
CDY56601	Canola	cytosol, golgi, plastid	30.7	54.74
GSMUA_Achr6P16290_001	Banana	nucleus	34.35	36.63
GSMUA_Achr6P08260_001	Banana	nucleus	29.64	34.03
Os02t0506100-00	Rice	plastid	20.82	31.42
EES11990	Sorghum	nucleus	25.38	29.4
HORVU2Hr1G069400.8	Barley	nucleus	22.64	29.27
TraesCS7A01G134600.1	Wheat	nucleus	25.68	29.19
Os04t0382800-00	Rice	nucleus	25.23	29.07
TraesCS2B01G299400.1	Wheat	nucleus, plastid	24.47	28.9
TraesCS7B01G035800.1	Wheat	nucleus	25.38	28.89
Zm00001d025208_P002	Maize	nucleus	25.68	28.84
Zm00001d003996_P001	Maize	nucleus	24.92	28.82
TraesCS2A01G282200.1	Wheat	nucleus	24.77	28.8
TraesCS7D01G134000.1	Wheat	nucleus	25.08	28.5
TraesCS2D01G281000.1	Wheat	nucleus, plastid	24.32	28.27
VIT_15s0046g01530.t01	Wine grape	mitochondrion	26.6	26.56
KXG30263	Sorghum	mitochondrion	23.71	25.08
Zm00001d000402_P001	Maize	mitochondrion	20.06	24.09
VIT_02s0025g00840.t01	Wine grape	nucleus	24.77	23.94
VIT_19s0090g00370.t01	Wine grape	plastid	25.08	23.01
VIT_10s0116g01830.t01	Wine grape	nucleus	24.16	21.57

Protein Annotations

EntrezGene:100256259	wikigene:100256259	MapMan:35.1	ProteinID:CCB55460	ProteinID:CCB55460.1	ncoils:Coil
UniProt:F6HKN8	EMBL:FN595991	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
EntrezGene:LOC100256259	wikigene:LOC100256259	PANTHER:PTHR31071	PANTHER:PTHR31071:SF7	UniParc:UPI0001983F1A	ArrayExpress:VIT_08s0007g02790
EnsemblPlantsGene:VIT_08s0007g02790	EnsemblPlants:VIT_08s0007g02790.t01	RefSeq:XP_002275906	RefSeq:XP_002275906.2	RefSeq:XP_010654126.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:16840871..16844494

Molecular Weight (calculated)

74319.5 Da

IEP (calculated)

9.949

GRAVY (calculated)

-0.936

Length

658 amino acids

Sequence
(BLAST)

001: MPRQNHGIQG LIPGKIRKRG CSSSSSTSSV LQKYRFKRAI LVGKRGGSST PVPTWRLMNS RSPASAMRAM ESPRSMGGGK AKQAPVSARK LAATLWEMNE
101: MPSPRADDEK RSKREVRGRE RVARSLHSGS LPPHLSDPSH SPVSERIDRS GTSSYRRKTS SISQRLRLAD HNVGVMDSFS SASLMEIEIR SRGQTPSGST
201: VGVRTRLKDV SNALTTSKEL LKIISRIWGH EDQPSSSMSL ISALHAELER ARLHINQLIQ EQRSDQSEIN YLMKCFAEEK AAWKSKEQQV IEAAIESIAG
301: ELEVERKLRR RFESLNKKLG RELAETKTSL IKAVKELECE KRAREIMEQV CDELTQDVGE DKDEVEEIKR ESAKVREEAE KEREILQLAD VLREERAQSK
401: ISEAKYQFEE KNAVVEKLKN ELEVFMRSKK AKEKGRGSLK HDNFSEIAAY LSRTHFGTLQ NEENEDDGEV EDALDCEEDS AESDLHSIEL NMDNNNKSYK
501: WTSSRVSRDL RKVPIDEEET RVRKSTSGKM SRRSTSLQRS MSDGIDWGIQ SENLQSSRDG LDWGRFYELE KEAQGKGYGD EMQRYKSVKG LRDQILAGSR
601: IGSARVFASP TRQWGQAWPS RDPSSAAQER PATAQGSGLK SRLVETKGEG QTTRRSKR

Best Arabidopsis Sequence Match ( AT3G11590.1 )
(BLAST)

001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW

Arabidopsis Description

At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.