Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08511 | Canola | plastid | 98.36 | 97.56 |
| AT3G11590.1 | Thale cress | plastid | 90.33 | 88.59 |
| CDY56601 | Canola | cytosol, golgi, plastid | 46.39 | 76.69 |
| CDX73866 | Canola | cytosol | 45.9 | 75.88 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 62.95 | 58.36 |
| KRG96225 | Soybean | nucleus | 62.46 | 58.17 |
| KRH67971 | Soybean | plastid | 62.3 | 57.58 |
| PGSC0003DMT400072353 | Potato | plastid | 56.72 | 52.82 |
| Solyc10g083190.1.1 | Tomato | plastid | 55.74 | 51.44 |
| CDX70996 | Canola | nucleus | 28.52 | 36.63 |
| CDX88802 | Canola | nucleus | 27.87 | 36.32 |
| CDY67997 | Canola | mitochondrion, plastid | 26.89 | 34.82 |
| CDX92367 | Canola | mitochondrion, plastid | 27.38 | 34.79 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 34.43 | 34.04 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 28.36 | 30.19 |
| EES11990 | Sorghum | nucleus | 26.56 | 28.52 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 23.77 | 28.49 |
| Os04t0382800-00 | Rice | nucleus | 26.39 | 28.2 |
| Zm00001d025208_P002 | Maize | nucleus | 27.05 | 28.16 |
| Zm00001d003996_P001 | Maize | nucleus | 26.23 | 28.12 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 25.57 | 28.01 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 25.9 | 27.92 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 25.74 | 27.74 |
| Os02t0506100-00 | Rice | plastid | 19.67 | 27.52 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 25.57 | 26.99 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 25.41 | 26.77 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 25.25 | 26.6 |
| CDX80001 | Canola | nucleus | 14.43 | 26.51 |
| KXG30263 | Sorghum | mitochondrion | 24.59 | 24.12 |
| CDY42023 | Canola | nucleus | 16.23 | 23.68 |
| Zm00001d000402_P001 | Maize | mitochondrion | 20.33 | 22.63 |
| CDY37111 | Canola | nucleus | 23.93 | 21.5 |
| CDY34403 | Canola | nucleus | 19.84 | 21.04 |
| CDY39728 | Canola | nucleus | 20.33 | 20.81 |
| CDY25414 | Canola | mitochondrion | 21.64 | 20.72 |
| CDY22812 | Canola | nucleus | 22.3 | 20.61 |
| CDY25566 | Canola | nucleus | 19.51 | 20.55 |
| CDY29821 | Canola | mitochondrion | 21.48 | 20.5 |
| CDY44461 | Canola | nucleus | 20.16 | 20.4 |
| CDX80002 | Canola | cytosol | 0.98 | 13.04 |
Protein Annotations
| EnsemblPlants:CDY01038 | EnsemblPlantsGene:GSBRNA2T00111070001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF7 | ProteinID:CDY01038 |
| ProteinID:CDY01038.1 | SEG:seg | UniParc:UPI0004EC8D00 | MapMan:35.1 | : | : |
Description
BnaC05g41620D
Coordinates
chrLK031923:+:854447..857616
Molecular Weight (calculated)
68392.8 Da
IEP (calculated)
9.832
GRAVY (calculated)
-0.913
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRQNQTVEN LLLLGKIRKR GCSSPTSSTS SVLREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPAAS PSQCGSKTGR GAPAAPVSAR KLAATLWEMN
101: EMPSSPRGVE EATSRKVRKE RIAPLPPPPP PRSVRSGSLP PHLSDPSHSP VSERMERSGT GSRQRRASST VQKLRLGDHN VVARDRISNA SFMDIETRSR
201: AETPTGSTTV GVKTRLKDCS NALTTSKELL KIINRMWGQE DRPSSSMSLV SALHSELERA RLQVNEVIRE HKPENSDVTY LMKRFAEEKA AWKSHEQEVV
301: EAAIESVAGE LEVERKLRRR FEGLNKKLGK ELSDTKAALM KAVKEIENEK RARVMVEKVC DELARDISED KAEVEELKRE SFKVKEEVEK EREMLQLADA
401: LREERVQMKL SEAKHQLEEK NAAVDKLRNQ LQTYLKAKRC KEKSIEPPQT EEYLNHHIGF GSYNIEDGEV EDENEEDSGG ESDLHSIELN MENKSYKWPY
501: GEENNRVGRK STPSKSLSLQ RSISDCVDWV VQSEKLQKSG DGGLDWGRSV EVEPKGYLDE TQAYKPSKAS SKDHLLSGPR LSNFRGGSVS KSRLSDAAKG
601: ENQNARKSRW
101: EMPSSPRGVE EATSRKVRKE RIAPLPPPPP PRSVRSGSLP PHLSDPSHSP VSERMERSGT GSRQRRASST VQKLRLGDHN VVARDRISNA SFMDIETRSR
201: AETPTGSTTV GVKTRLKDCS NALTTSKELL KIINRMWGQE DRPSSSMSLV SALHSELERA RLQVNEVIRE HKPENSDVTY LMKRFAEEKA AWKSHEQEVV
301: EAAIESVAGE LEVERKLRRR FEGLNKKLGK ELSDTKAALM KAVKEIENEK RARVMVEKVC DELARDISED KAEVEELKRE SFKVKEEVEK EREMLQLADA
401: LREERVQMKL SEAKHQLEEK NAAVDKLRNQ LQTYLKAKRC KEKSIEPPQT EEYLNHHIGF GSYNIEDGEV EDENEEDSGG ESDLHSIELN MENKSYKWPY
501: GEENNRVGRK STPSKSLSLQ RSISDCVDWV VQSEKLQKSG DGGLDWGRSV EVEPKGYLDE TQAYKPSKAS SKDHLLSGPR LSNFRGGSVS KSRLSDAAKG
601: ENQNARKSRW
001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.