Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009093.1-P | Field mustard | nucleus | 93.16 | 92.35 |
| CDX70170 | Canola | nucleus | 92.98 | 92.01 |
| CDX80954 | Canola | mitochondrion, nucleus | 61.58 | 62.79 |
| CDY52144 | Canola | nucleus | 62.28 | 57.26 |
| AT5G05190.1 | Thale cress | nucleus | 59.12 | 54.8 |
| PGSC0003DMT400059103 | Potato | nucleus | 24.56 | 14.85 |
| KRH53706 | Soybean | nucleus | 23.86 | 13.86 |
| Solyc03g095610.2.1 | Tomato | mitochondrion, nucleus | 21.05 | 13.67 |
| KRH72549 | Soybean | nucleus | 25.26 | 13.65 |
| VIT_13s0067g03220.t01 | Wine grape | mitochondrion, nucleus | 24.74 | 11.71 |
| KRH16932 | Soybean | nucleus | 23.33 | 11.36 |
| CDY27216 | Canola | nucleus | 8.77 | 11.16 |
| CDX72139 | Canola | nucleus | 9.47 | 9.76 |
| CDX67646 | Canola | nucleus | 14.04 | 5.83 |
| CDY32014 | Canola | nucleus | 14.21 | 5.78 |
Protein Annotations
| EnsemblPlants:CDX98822 | EnsemblPlantsGene:GSBRNA2T00106920001 | InterPro:Zinc_ribbon_12 | ncoils:Coil | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF21 |
| PFAM:PF11331 | ProteinID:CDX98822 | ProteinID:CDX98822.1 | SEG:seg | UniParc:UPI0004EF4D9E | MapMan:35.1 |
Description
BnaC09g50130D
Coordinates
chrLK031907:+:164991..166878
Molecular Weight (calculated)
64276.9 Da
IEP (calculated)
7.876
GRAVY (calculated)
-1.145
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKSGQRVR LVKCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRTIAPNT TPSAGEAEGA HASEPETNNV SISSEQDTVL PPTTGHSTGQ ADKKTLDRSL
101: ESTEKQLGDS IGEEGNENQL QEHSPSDSDK NESEDNSSRF KSDVKPVAEE AMGEGTSSGS LDAISPDASP VEEEQNEDDY FFNRHRESTD DLPANKTPST
201: YDGSESSSDE REELLDENEQ WKALQELSSG KFQMQRYPEN LKEQRRGSSS SSTFYEKRPS NVTPTTYMER YQNRSLQLEG PGGRHGRQGR RHVTEQLRPN
301: LPLYPREQPY NTRVSPSYPS QDEFDGYSRA HSLQRPSYES VVNHMYHNST RARGRGQGSR FSGEMSNDRR NHPGWYSGSY SSYPASPQRP PMEQPPAYYP
401: RRWSHEIVSD AEDHQRYRHA GHHHHDIQAR RLKERQQRVA KRHIRPTAGG APFVGCYKCS ESLQLPVDFL IFKRKYHLLR CGRCTAVLRF SLQSRTHLVP
501: AVVKRDINAN RSSNTTSESP RDKAPSRKPE KLSSSAQEEE VPVARGSPLH RLMGYSTVSQ VFKASQRPPL
101: ESTEKQLGDS IGEEGNENQL QEHSPSDSDK NESEDNSSRF KSDVKPVAEE AMGEGTSSGS LDAISPDASP VEEEQNEDDY FFNRHRESTD DLPANKTPST
201: YDGSESSSDE REELLDENEQ WKALQELSSG KFQMQRYPEN LKEQRRGSSS SSTFYEKRPS NVTPTTYMER YQNRSLQLEG PGGRHGRQGR RHVTEQLRPN
301: LPLYPREQPY NTRVSPSYPS QDEFDGYSRA HSLQRPSYES VVNHMYHNST RARGRGQGSR FSGEMSNDRR NHPGWYSGSY SSYPASPQRP PMEQPPAYYP
401: RRWSHEIVSD AEDHQRYRHA GHHHHDIQAR RLKERQQRVA KRHIRPTAGG APFVGCYKCS ESLQLPVDFL IFKRKYHLLR CGRCTAVLRF SLQSRTHLVP
501: AVVKRDINAN RSSNTTSESP RDKAPSRKPE KLSSSAQEEE VPVARGSPLH RLMGYSTVSQ VFKASQRPPL
001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI
Arabidopsis Description
EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.