Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27216 | Canola | nucleus | 33.82 | 41.74 |
| CDY32014 | Canola | nucleus | 28.93 | 11.41 |
| CDX67646 | Canola | nucleus | 28.03 | 11.29 |
| CDX80954 | Canola | mitochondrion, nucleus | 10.31 | 10.2 |
| CDY52144 | Canola | nucleus | 11.03 | 9.84 |
| CDX70170 | Canola | nucleus | 10.13 | 9.72 |
| CDX98822 | Canola | nucleus | 9.76 | 9.47 |
| PGSC0003DMT400059103 | Potato | nucleus | 11.21 | 6.57 |
| KRH72549 | Soybean | nucleus | 12.3 | 6.45 |
| KRH53706 | Soybean | nucleus | 10.67 | 6.01 |
| KRH16932 | Soybean | nucleus | 12.3 | 5.81 |
| VIT_13s0067g03220.t01 | Wine grape | mitochondrion, nucleus | 11.75 | 5.4 |
| Solyc03g095610.2.1 | Tomato | mitochondrion, nucleus | 8.5 | 5.35 |
Protein Annotations
| EnsemblPlants:CDX72139 | EnsemblPlantsGene:GSBRNA2T00155958001 | ncoils:Coil | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF21 | ProteinID:CDX72139 |
| ProteinID:CDX72139.1 | SEG:seg | UniParc:UPI0004EE69A2 | MapMan:35.2 | : | : |
Description
BnaC08g27350D
Coordinates
chrLK031795:+:2615662..2617679
Molecular Weight (calculated)
62113.3 Da
IEP (calculated)
7.063
GRAVY (calculated)
-0.837
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVKKEKKQS RSQSSTEKKT LEPKLLSIFS SKLASGKDMK HMLRGMSSKP APGLSCQSRV VRCPKCHKLL QAPVDVTIYT CSECHSIPQA KRLEQENNDK
101: SIPPEDHLLP CQNRSLTPVR STYRKYSSRA SSSPYKGSGD RITDAVNLET KGIKERDTRR SISSEFYDLK LEAFQPASSV NTRKESAQGG GGGSGSITPV
201: ISNYRKYSSR ASPPLFERGY HSENASYILR EWMTSATPSP SSYGYTSSPF HGSSAAASPA RFQCETSDQK YYHRSSQQSR MHVSQLSITK KEDIALLDLL
301: RFVDFAEDSA SDSHHSDKGS GDRVCDAVMW ETFEEDKGIK EEIRSISSKF IDLTFQRQWN HKLRAQASLL GDGGSGEIHE EQSKHEYENI SKRQELLEER
401: AGLHLEEYET NYENNYSNAF EWMTPTFHVP EYEPDEEEPW LVDDNKTKEL QVVGVVVEDG PSLHFDKCGY ESENTPTSEK ENEKSGRTSE VVGRRHALYQ
501: TQTSPLSTLP IDTPIGSPRH ILMRSPMHSH IVSPLRSPTN SSGSLSDVLS LAK
101: SIPPEDHLLP CQNRSLTPVR STYRKYSSRA SSSPYKGSGD RITDAVNLET KGIKERDTRR SISSEFYDLK LEAFQPASSV NTRKESAQGG GGGSGSITPV
201: ISNYRKYSSR ASPPLFERGY HSENASYILR EWMTSATPSP SSYGYTSSPF HGSSAAASPA RFQCETSDQK YYHRSSQQSR MHVSQLSITK KEDIALLDLL
301: RFVDFAEDSA SDSHHSDKGS GDRVCDAVMW ETFEEDKGIK EEIRSISSKF IDLTFQRQWN HKLRAQASLL GDGGSGEIHE EQSKHEYENI SKRQELLEER
401: AGLHLEEYET NYENNYSNAF EWMTPTFHVP EYEPDEEEPW LVDDNKTKEL QVVGVVVEDG PSLHFDKCGY ESENTPTSEK ENEKSGRTSE VVGRRHALYQ
501: TQTSPLSTLP IDTPIGSPRH ILMRSPMHSH IVSPLRSPTN SSGSLSDVLS LAK
0001: MMKKKKQSRS QSSSTKKTFE PSSDSSPSPR LLSIIRSKLA SSKDLKHMFR GMRSRTVPGL SSQSRIVRCP KCHKLLQEPL DATSYKCGGC DSILHAKRWE
0101: PDGNDHTNTI PEALLSSQNR SLSAEVESPE DGSRTPMRTT HREYNSRPST SVERGYHPET VYKPETSDIR REWMRRTDDF SETGDSDVFT SERSSPYNTR
0201: SNAAQWAQHE GRYADPPRVP FYPASPSPSS AYEYGYSSPF HGSYVSASEQ SYYHQQPNQF EQYSREGWFQ ESSVASPTRF PGETSDGKYY HRSSQSQLHD
0301: LQYHNLYEPS RSETPHHSVY SERSYVPAAA PHRSTYSEHS VGISKSDTSS EKSILRNKKR YVRERNPVVK RHILPSAGGA PFATCSYCLE LLQLPQVSPQ
0401: GKRQRYQVRC GSCSGVLKFS IREKADTVLD SPSFVDYGMD FADETVTNHQ DSASEGHEEI NPDGSHLTCL DDDSGETICK SNDAVILSQK ILETFEDKGI
0501: KEDIRNISTK FLDLKLEALQ PHLKPMGNRR LSEQQPTSSE TIGETSKIHL EQSQEAHSEK STEMDNNICD IEEPEYEKNE IIKPEEIVGE GSGESLEVPV
0601: NQNERMSESS EEDERVAERS VSHSEELLYK KEYVSETRVQ SENTGDTYEF EWEETQETEE YEGESTLEEI GDKPQLHLDK SRYTRDSICD SSLSYGEPFE
0701: DTSVKEDTEH ISNTISDAKS ATTHSPLNSL VNENQRFIGH LDQSGEATVT ISRIQEHSKY EYENLSERQE LEMTISDRVT CKLEESRYET NETLEPSKVG
0801: EDGSLVSFEK VSEAFETIIE GKTGEERLVS HQMDSPNENV ENSYGTLEPV YLEESGFAGE RTWEGTIEDR AGLHLEEYES NYENYSRPFE WTSETAPTFR
0901: MHDYELGTIL EPDEYADGRS ESSSRGSFND DGGSEERVVF HESQVAIPEQ SHYEYENSSK RQELSDTVFD IARSELQEYR YERNETLEPS KMVGDGSVVP
1001: VEKAGETFIS KKNEDSSVSH QMESQNEDME NSYGTKEPVY PEGSRCESEN SWAETMGDGA GLKLEEYNSN PFEWTSEKAA AFHLHEYERW TVPEPEEDAN
1101: ERSITSSRDS FNDHENLKGI AVSHEEEPWL VDENRTEALK VGVMVEDEPS LHLTKFENET MKLEETLEWT SERAPTFRLP EYELGEMLES DNDVDERSEY
1201: SSKGSFNDHE IPRELLNEED PQLVIDGRTE AVQVGEMAKD TVSLHLEECG NESMKLDETF EWTSGRTLTF RRHGYEVETK LEADEDADGR SESSSRGSFN
1301: DRGSSKERAV LHEDGSWLVD DYETKALKVG VMAEDGSSLQ LEKGENGKMD LDETLEPRDD IFRLSLDDTL EQERMTFHLK MSQDKQESLR QTFKQGDAEK
1401: DSDVFSEGHE FPSKMAELDS DTEEEIVEEQ LEHLQKENEK LSLTFEQHDH IYSTTEPSEI VGLRHALYQT QNSPLRSPLT SPIHTPIGSP LHYLMASQIR
1501: SPIASTMHSH IVSPLRSPIN SSGSLSDVLF FSKKT
0101: PDGNDHTNTI PEALLSSQNR SLSAEVESPE DGSRTPMRTT HREYNSRPST SVERGYHPET VYKPETSDIR REWMRRTDDF SETGDSDVFT SERSSPYNTR
0201: SNAAQWAQHE GRYADPPRVP FYPASPSPSS AYEYGYSSPF HGSYVSASEQ SYYHQQPNQF EQYSREGWFQ ESSVASPTRF PGETSDGKYY HRSSQSQLHD
0301: LQYHNLYEPS RSETPHHSVY SERSYVPAAA PHRSTYSEHS VGISKSDTSS EKSILRNKKR YVRERNPVVK RHILPSAGGA PFATCSYCLE LLQLPQVSPQ
0401: GKRQRYQVRC GSCSGVLKFS IREKADTVLD SPSFVDYGMD FADETVTNHQ DSASEGHEEI NPDGSHLTCL DDDSGETICK SNDAVILSQK ILETFEDKGI
0501: KEDIRNISTK FLDLKLEALQ PHLKPMGNRR LSEQQPTSSE TIGETSKIHL EQSQEAHSEK STEMDNNICD IEEPEYEKNE IIKPEEIVGE GSGESLEVPV
0601: NQNERMSESS EEDERVAERS VSHSEELLYK KEYVSETRVQ SENTGDTYEF EWEETQETEE YEGESTLEEI GDKPQLHLDK SRYTRDSICD SSLSYGEPFE
0701: DTSVKEDTEH ISNTISDAKS ATTHSPLNSL VNENQRFIGH LDQSGEATVT ISRIQEHSKY EYENLSERQE LEMTISDRVT CKLEESRYET NETLEPSKVG
0801: EDGSLVSFEK VSEAFETIIE GKTGEERLVS HQMDSPNENV ENSYGTLEPV YLEESGFAGE RTWEGTIEDR AGLHLEEYES NYENYSRPFE WTSETAPTFR
0901: MHDYELGTIL EPDEYADGRS ESSSRGSFND DGGSEERVVF HESQVAIPEQ SHYEYENSSK RQELSDTVFD IARSELQEYR YERNETLEPS KMVGDGSVVP
1001: VEKAGETFIS KKNEDSSVSH QMESQNEDME NSYGTKEPVY PEGSRCESEN SWAETMGDGA GLKLEEYNSN PFEWTSEKAA AFHLHEYERW TVPEPEEDAN
1101: ERSITSSRDS FNDHENLKGI AVSHEEEPWL VDENRTEALK VGVMVEDEPS LHLTKFENET MKLEETLEWT SERAPTFRLP EYELGEMLES DNDVDERSEY
1201: SSKGSFNDHE IPRELLNEED PQLVIDGRTE AVQVGEMAKD TVSLHLEECG NESMKLDETF EWTSGRTLTF RRHGYEVETK LEADEDADGR SESSSRGSFN
1301: DRGSSKERAV LHEDGSWLVD DYETKALKVG VMAEDGSSLQ LEKGENGKMD LDETLEPRDD IFRLSLDDTL EQERMTFHLK MSQDKQESLR QTFKQGDAEK
1401: DSDVFSEGHE FPSKMAELDS DTEEEIVEEQ LEHLQKENEK LSLTFEQHDH IYSTTEPSEI VGLRHALYQT QNSPLRSPLT SPIHTPIGSP LHYLMASQIR
1501: SPIASTMHSH IVSPLRSPIN SSGSLSDVLF FSKKT
Arabidopsis Description
Uncharacterized protein T5P19_60 [Source:UniProtKB/TrEMBL;Acc:Q9LXZ9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.