Factsheet for VIT_13s0067g03220.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g01570.t01
VIT_08s0007g08760.t01
VIT_16s0098g01660.t01
VIT_17s0000g02010.t01
VIT_17s0000g06570.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05190.1	VIT_17s0000g02010.t01	AT1G48480.1	15618630
AT5G05190.1	VIT_08s0007g08760.t01	AT2G41680.1	21798944
AT5G05190.1	VIT_17s0000g02010.t01	AT3G17840.1	15618630
AT5G05190.1	VIT_05s0020g01570.t01	AT4G15730.1	21798944
AT5G05190.1	VIT_16s0098g01660.t01	AT5G53060.1	21798944
AT5G05190.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944
AT5G05190.1	VIT_17s0000g06570.t01	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059103	Potato	nucleus	22.18	28.31
KRH53706	Soybean	nucleus	22.67	27.83
Solyc03g095610.2.1	Tomato	mitochondrion, nucleus	19.77	27.11
KRH72549	Soybean	nucleus	23.17	26.45
CDX80954	Canola	mitochondrion, nucleus	11.71	25.22
CDX98822	Canola	nucleus	11.71	24.74
Bra009093.1-P	Field mustard	nucleus	11.63	24.35
KRH16932	Soybean	nucleus	23.59	24.25
CDY52144	Canola	nucleus	12.46	24.19
CDX70170	Canola	nucleus	11.46	23.96
AT5G05190.1	Thale cress	nucleus	12.21	23.9
Bra005847.1-P	Field mustard	nucleus	12.54	22.71
CDY27216	Canola	nucleus	5.56	14.96
CDX72139	Canola	nucleus	5.4	11.75
Bra007244.1-P	Field mustard	nucleus	5.98	10.01
CDY32014	Canola	nucleus	9.72	8.35
CDX67646	Canola	nucleus	9.47	8.3
Bra003240.1-P	Field mustard	nucleus	9.55	7.82
AT3G56410.2	Thale cress	nucleus, plastid	9.97	7.82

Protein Annotations

ArrayExpress:VIT_13s0067g03220	EMBL:FN595514	EnsemblPlants:VIT_13s0067g03220.t01	EnsemblPlantsGene:VIT_13s0067g03220	EntrezGene:104881083	InterPro:Zinc_ribbon_12
PANTHER:PTHR31105	PANTHER:PTHR31105:SF21	PFAM:PF11331	ProteinID:CCB49774	ProteinID:CCB49774.1	RefSeq:XP_010658164.1
RefSeq:XP_010658165.1	RefSeq:XP_010658166.1	SEG:seg	unigene:Vvi.13926	UniParc:UPI000210A106	UniProt:F6HC28
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:1785241..1789660

Molecular Weight (calculated)

134045.0 Da

IEP (calculated)

4.376

GRAVY (calculated)

-0.944

Length

1204 amino acids

Sequence
(BLAST)

0001: MISGPATKIR LVRCPKCWKL LPEVAGIPLY QCGGCGVFLR AKNHGNSTKT TPSGSHETGS VQRNELVHVS ENEESSSSSR EAIPSSTGEC SLNKENGRDD
0101: LGDCRTEQPE VNFSNGVSST TKQPEDANFS DKVPSSINLS NEVSSLMKHF EDVNISDEGS SSKVQPEEVN FSNEVSSPME QPEDANISDE GSSSKVQPED
0201: VNFSNEVSSP MVQPEDVNIS NEGSSSNVHP EDVNSSNEVS SPMEQQPEDV NISNEGSSSN VQPKDVNFSN EVSSPMEQQP EDVNISNEGS SSNVQPEDVN
0301: ISNEVSSPTE QQPEDVNISN EGSSPNVQPE DANFSNEVSS PMEQPEDVNI SNEGSSSNVQ PEDVNISNEV SSPTEQQPED VNISNEGSSP NVQPEDANFS
0401: NEVSSPMEQP EDVNISNEGS SSNVQPEDIN ISNEGSSSNV RPEDVNFSNE VSALVEQPED VNFSNQVSSL MEQPADVFSN EVSLPREQPE DVNFSNEAVS
0501: SVEQPEDVDY LDEVLSPKEQ SEDVDFLDEV SSPKEQPKDI NFSNEVSSSK QQPDNLNFLN EVSLSTEKPE DVSFLNEVSS STELMCHENE EPQPIVGANT
0601: VYEDDEGGFY SRSLSSDSLL ASRERSSEVT AQRLTGECMK QDTPMSHSNE QPEQSDDDVL HGYMYRSPTA RSFYGYDGSV SSYDGTDDQV LDRSLHQPNR
0701: TFKAREFVGP EERSRGKFLV NSNLEMQRQT RNASSILSGK EHYPKKYGKW NRDDFPESTR YDQPVRNWMR LERGEFPSRL PFYGRDFPAG YENDIPSSPG
0801: HPDYQHSSSF HSPDMPERHE QERIKLLKML CELQDQINKK HNGRDPTRVG WKGKHIAKSY NHEASEEEIF NDLNYPRYPD QYRTGRNWPQ HRKFSRMAFS
0901: GEAPNSRRQA DYSCLHCCPQ DRWYSAQLRP PVPCCENGLH GARPGHRCYH HCTSTHSSPL QCMDSEIPIW THGAKSEDQG HKNHEAKLYW KEKPHQVKRH
1001: IQPIAGGAPF LTCYHCSHLL QLPADFLLFK RRCHGLRCGA CYELLKFSVE NRTHIVQYTP NAVDPRPPPP SEVDDVSRTL NSVGLPSTAL VSDCSPAYPV
1101: SCSDDYGLSF CKSFSTEGET AFITPPFGPM GERNKKLILK KSQNKYKEPV ETYKSIGSSS NMSKPEKSST EIEELPPTAG SPLYRLMDYS SPSAMIYGSG
1201: MDTD

Best Arabidopsis Sequence Match ( AT5G05190.1 )
(BLAST)

001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI

Arabidopsis Description

EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.