CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02231
KRH03510
KRH12132
KRH33290
KRH37127
KRH38126
KRH39040
KRH41871
KRH48661
KRH50884
KRH53532
KRH54582
KRH54704
KRH56889
KRH60559
KRH63230
KRH63298
KRH64403
KRH71929
KRH72015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05190.1	KRH39040	AT1G48480.1	15618630
AT5G05190.1	KRH41871	AT1G48480.1	15618630
AT5G05190.1	KRH48661	AT1G48480.1	15618630
AT5G05190.1	KRH60559	AT1G48480.1	15618630
AT5G05190.1	KRH33290	AT2G41680.1	21798944
AT5G05190.1	KRH72015	AT2G41680.1	21798944
AT5G05190.1	KRH39040	AT3G17840.1	15618630
AT5G05190.1	KRH41871	AT3G17840.1	15618630
AT5G05190.1	KRH48661	AT3G17840.1	15618630
AT5G05190.1	KRH60559	AT3G17840.1	15618630
AT5G05190.1	KRH02231	AT4G15730.1	21798944
AT5G05190.1	KRH12132	AT4G15730.1	21798944
AT5G05190.1	KRH37127	AT4G15730.1	21798944
AT5G05190.1	KRH50884	AT4G15730.1	21798944
AT5G05190.1	KRH38126	AT5G06780.1	21798944
AT5G05190.1	KRH71929	AT5G06780.1	21798944
AT5G05190.1	KRH53532	AT5G53060.1	21798944
AT5G05190.1	KRH64403	AT5G53060.1	21798944
AT5G05190.1	KRH54704	AT5G61010.1	21798944
AT5G05190.1	KRH63230	AT5G61010.1	21798944
AT5G05190.1	KRH03510	AT5G61380.1	21798944
AT5G05190.1	KRH54582	AT5G61380.1	21798944
AT5G05190.1	KRH56889	AT5G61380.1	21798944
AT5G05190.1	KRH63298	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72549	Soybean	nucleus	45.36	42.18
KRH16932	Soybean	nucleus	44.55	37.32
PGSC0003DMT400059103	Potato	nucleus	25.79	26.83
Solyc03g095610.2.1	Tomato	mitochondrion, nucleus	22.43	25.06
CDX98822	Canola	nucleus	13.86	23.86
CDX80954	Canola	mitochondrion, nucleus	13.46	23.61
CDX70170	Canola	nucleus	13.66	23.26
Bra009093.1-P	Field mustard	nucleus	13.56	23.13
VIT_13s0067g03220.t01	Wine grape	mitochondrion, nucleus	27.83	22.67
AT5G05190.1	Thale cress	nucleus	13.86	22.11
CDY52144	Canola	nucleus	13.86	21.94
Bra005847.1-P	Field mustard	nucleus	14.68	21.65
CDY27216	Canola	nucleus	6.22	13.62
CDX72139	Canola	nucleus	6.01	10.67
Bra007244.1-P	Field mustard	nucleus	6.83	9.32
CDX67646	Canola	nucleus	11.31	8.08
CDY32014	Canola	nucleus	11.42	7.99
Bra003240.1-P	Field mustard	nucleus	10.81	7.21
AT3G56410.2	Thale cress	nucleus, plastid	10.09	6.45

Protein Annotations

EMBL:ACUP02003480	EnsemblPlants:KRH53706	EnsemblPlantsGene:GLYMA_06G141400	EntrezGene:102659942	InterPro:Zinc_ribbon_12	PANTHER:PTHR31105
PANTHER:PTHR31105:SF21	PFAM:PF11331	ProteinID:KRH53706	ProteinID:KRH53706.1	SEG:seg	UniParc:UPI000296C2D4
UniProt:K7KV03	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:11528982..11534077

Molecular Weight (calculated)

107852.0 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.899

Length

981 amino acids

Sequence
(BLAST)

001: MSGDLAPKLR VVRCPKCRLL LEEPAGCDLY KCGECGTTLQ AKKRTNVAAN SKSSVQATDA TPRNASDHVS EGKQRNNRNH LVPSREDSLK ERETSSGECH
101: VDGNAGRGQN ENGDQLVPFI LSDEGQETES DIYSLSHRRH RVSIKGGSAS NKTTHSEIGE INDGNLEEEA EEESVCALDE DGDNDRSALI GVTSEKEITE
201: GDLEGVEGLN NENLSLEGEK EFISDSDGED DNEEESALAG AILEVEITES DSVGAEDLND GNLLPEGAEE LSSALERKDA NNDKSVIVGE NLELETTEKN
301: IAEELNDGKL SEGAEHAPDG EDSNNDPSAI EGAKPEVDTT ENASTTDRTS REKGNILHVT PDKVEEGTPA NPTSSHKQQK KAKKIIHRGS DRVRSVDTTE
401: LIDPSSELSG ILAGKLPKSP TTRSSFAYDG SLSSYDGMDE PFPIQHSGSF DNTYTNANGV SEGRTRKGKG LVNSIYGGLE TQHQSHMSNA KLHAKKDSRG
501: NQNKVVDSTR NGHQRWMGTK RDEFPPKIPL HRSGSHSYYE RGSSSNQMHD ALYHSSSFLS PDSSEDTDHE KMKLLRMINK LQDQLSRTLY KGGETNGRLP
601: KGVSYKGNHI SAYHSHDFGE GRRFSHSLDY PSCDGRCGHG VNWHQRHHKF SRIPYSAEAT RNAHHVDHSC YHCFSQERHF STDMSMSPHV LFQHEGLHGS
701: CSGQDCCSFS HHSYPSSPQW FIASKLPPIY GRKTKSDEQR RRAPDLKKYL REKKNLVAKR HHRPVAGGAP FVTCHKCLNL LQLPADFLLF ERACHQLICG
801: ECSEVLKFSM HGSHIDFFSP NNAIGPPSSD LNGRSEVISS RNLPSASHAN YYHYSATEAI SYYDDYGLSI SKSYSSEGEP VSLAHSHHLH SGEYANPSVS
901: HGTFEPSTEK ENINPRYSSA RKGQVETDAS AMFSSNMSGS RKMASEMEAR PAPKSSSLHL LMGYSSPSQV IRGTRPSVEG N

Best Arabidopsis Sequence Match ( AT5G05190.1 )
(BLAST)

001: MASQTGQKIR LVRCPKCLKI LQEDEDVPVY QCGGCSAILQ AKRRNIAPSS TPSAGETERA QANEPQSVPE TNNVSSSSGQ DTVLPSSPGR SVDQEYEKGR
101: NASMESTEKE LDDLELSNGD GTNEIQEQEC SLGDSEKNER EDNSRLESHM MNTVAEAAGS GSSSGSLSVD HVVAARASNP SGNSEISPDA SPVEEKQSQL
201: DILANKTPSA YDVVAARASN SSGNAEISPD ASPVEEKQSQ LDYPANKTSS AYDGSESSSD EREGQLLDDD EQWNALQKIR SGKFEMHRYP GYKEQGASSS
301: SPFSENRRNG ITTYNERHQN RSLQLEGPGG RLGRQGRRHV TEQLRPDMPF YPRESYTRGS PSHPSHDEFD RYPRAHSLQM PSYAGGMNHD FVDYMYHNNP
401: RARGQGQGSR ISGEMGRNHG GWYSGQLHNS YSSYSASPQR PMEQPEYHPR WRREIVSDVE DHQRNRHAGH HHELQTRRLR ERQRVAKRHV RPTAGGAPFV
501: SCYSCSENLQ LPVDFLIFKR KHHLLRCGTC TTVLRFSLQS RNHLVPAVTH DINANRNSNS TSESPIDKAP SKPEKLRSSV QDEELPVARG SPLHRLMGYS
601: TVSQVFKVSQ RPPSI

Arabidopsis Description

EDR4Protein ENHANCED DISEASE RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.