CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91075
KRG91663
KRG92651
KRG93261
KRG96949
KRH31880
KRH33290
KRH34070
KRH35133
KRH35698
KRH38611
KRH41328
KRH56582
KRH60053
KRH68710
KRH71564
KRH72015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	KRH31880	AT1G02870.1	21798944
AT2G41680.1	KRH71564	AT1G02870.1	21798944
AT2G41680.1	KRG91075	AT1G49850.1	21798944
AT2G41680.1	KRH35698	AT1G49850.1	21798944
AT2G41680.1	KRG91663	AT1G76760.1	21798944
AT2G41680.1	KRH35133	AT1G76760.1	21798944
AT2G41680.1	KRH33290	AT2G41680.1	21798944
AT2G41680.1	KRH72015	AT2G41680.1	21798944
AT2G41680.1	KRG92651	AT3G04860.1	21798944
AT2G41680.1	KRG96949	AT3G04860.1	21798944
AT2G41680.1	KRH34070	AT3G04860.1	21798944
AT2G41680.1	KRH68710	AT3G04860.1	21798944
AT2G41680.1	KRH38611	AT4G10930.1	21798944
AT2G41680.1	KRH41328	AT4G10930.1	21798944
AT2G41680.1	KRH60053	AT4G10930.1	21798944
AT2G41680.1	KRG93261	AT5G40440.1	21798944
AT2G41680.1	KRH56582	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72015	Soybean	nucleus	95.38	94.83
GSMUA_Achr8P09560_001	Banana	cytosol	36.99	83.12
PGSC0003DMT400070106	Potato	cytosol	36.8	82.68
HORVU2Hr1G023170.1	Barley	cytosol	75.34	81.12
VIT_08s0007g08760.t01	Wine grape	plastid	81.7	80.15
GSMUA_Achr8P09570_001	Banana	cytosol	26.59	78.86
Os07t0657900-02	Rice	plastid	75.92	76.5
TraesCS2B01G154700.1	Wheat	plastid	76.3	76.15
Bra004639.1-P	Field mustard	plastid	76.3	76.01
Bra000234.1-P	Field mustard	plastid	74.57	75.73
CDY35405	Canola	plastid	74.18	75.34
CDY22534	Canola	plastid	74.18	75.34
AT2G41680.1	Thale cress	plastid	76.3	74.86
CDX79923	Canola	mitochondrion, plastid	76.69	74.53
Solyc10g080080.1.1	Tomato	plastid	77.46	74.03
PGSC0003DMT400060907	Potato	plastid	77.26	73.85
KXG36845	Sorghum	plastid	74.37	73.66
CDY23835	Canola	plastid	76.49	73.11
Zm00001d022381_P016	Maize	plastid	74.95	70.34
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	75.53	69.26
Solyc04g016010.2.1	Tomato	nucleus	68.98	66.67
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.95	65.16
KRH76499	Soybean	nucleus	33.14	46.49
KRH28954	Soybean	nucleus	32.95	45.97
PGSC0003DMT400070103	Potato	plastid	18.88	45.58
KRH07823	Soybean	mitochondrion	34.49	45.43

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	EntrezGene:100819254	Gene3D:3.40.30.10	Gene3D:3.50.50.60	EMBL:ACUP02006447
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EnsemblPlantsGene:GLYMA_10G113100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	UniProt:I1L9Y6	InterPro:IPR013766	InterPro:IPR036188	EnsemblPlants:KRH33290	ProteinID:KRH33290
ProteinID:KRH33290.1	PFAM:PF00085	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573
PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
SUPFAM:SSF52833	TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233D7CA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:27457779..27470618

Molecular Weight (calculated)

56614.5 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.259

Length

519 amino acids

Sequence
(BLAST)

001: MATAKIGLGV GPVPTTTHRV TAVAASSSAA FSPPPHRLFF LNSSRPPLRP RPLPLRVAAA SSSPSVAAPG KGVENVVIIG SGPAGYTAAI YAARANLKPV
101: VFEGYQAGGV PGGQLMTTTE VENFPGFPDG ISGPDLMDRM RRQAERWGAE LYQEDVEVID VKSSPFTVQS SERKVKSHTV IYATGATAKR LRLPREDEFW
201: SRGISACAIC DGASPLFKGQ VLAVIGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVFDNPNV TVHFNTEAVD LVSNTKGQMS GILIRKIDTG
301: EESVLEAKGL FYGIGHSPNT ELLKGQVELD HSGYVQVQEG TAKTSVEGVF AAGDVQDHEW RQAITAAGSG CVAALSVERY LVSNDLLIEF HQPKTEEVKK
401: EQTDRDVHEG FDITLTKHKG QYALRKLYHD SPRLICVLYT SPTCGPCRTL KPILSKVIDE FDQNVHFVEI DIEEDPEIAE AAGIMGTPCV QYFKNKEMLK
501: TVSGVKMKRE YREFIEANK

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.