CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28954	Soybean	nucleus	97.3	96.77
CDY26806	Canola	cytosol, mitochondrion, peroxisome	28.65	83.46
PGSC0003DMT400048037	Potato	cytosol	72.16	81.4
Solyc03g032000.2.1	Tomato	cytosol, extracellular	71.89	81.1
Bra017711.1-P	Field mustard	cytosol	65.68	77.88
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	68.65	76.51
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	68.65	76.51
EES07372	Sorghum	cytosol, mitochondrion	68.38	76.44
Os02t0713400-01	Rice	extracellular, plasma membrane	68.11	76.13
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	68.11	76.13
TraesCS6B01G306300.1	Wheat	cytosol	68.11	75.9
CDY72417	Canola	cytosol	15.41	75.0
CDY22142	Canola	cytosol	15.41	75.0
PGSC0003DMT400035477	Potato	mitochondrion	73.78	74.39
CDX72537	Canola	mitochondrion	72.16	74.17
VIT_04s0044g01750.t01	Wine grape	mitochondrion	75.14	74.13
Solyc02g082250.2.1	Tomato	mitochondrion	73.51	74.11
Bra025646.1-P	Field mustard	cytosol	15.41	73.08
CDY40633	Canola	mitochondrion	71.89	73.08
AT4G35460.1	Thale cress	mitochondrion, plastid	73.78	72.8
Bra037274.1-P	Field mustard	mitochondrion	65.68	72.75
Zm00001d017823_P001	Maize	cytosol	68.65	72.16
CDY41653	Canola	mitochondrion	72.7	71.93
CDY24812	Canola	mitochondrion	72.43	71.85
Bra010533.1-P	Field mustard	mitochondrion	68.11	71.59
CDY07845	Canola	plastid	66.49	71.51
AT2G17420.1	Thale cress	mitochondrion, plastid	73.78	71.28
Bra024516.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	55.95	70.89
EER89710	Sorghum	mitochondrion	71.08	70.89
EES09948	Sorghum	mitochondrion	64.86	70.8
Zm00001d037429_P001	Maize	mitochondrion	70.54	70.54
CDX74655	Canola	peroxisome, plastid	32.7	70.35
CDY30367	Canola	mitochondrion	65.14	70.26
KRH07823	Soybean	mitochondrion	74.59	70.05
TraesCS7B01G194200.1	Wheat	golgi	69.46	69.65
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	55.95	69.46
GSMUA_Achr9P27590_001	Banana	mitochondrion	66.22	69.21
TraesCS7D01G229100.1	Wheat	mitochondrion	68.65	68.83
TraesCS7A01G225400.2	Wheat	mitochondrion	68.92	68.73
Zm00001d053118_P001	Maize	cytosol	64.05	67.91
HORVU7Hr1G046890.1	Barley	plastid	68.65	65.46
CDY05719	Canola	cytosol	30.54	63.13
CDY58054	Canola	cytosol	17.84	61.68
Bra031685.1-P	Field mustard	cytosol	17.57	60.75
CDX74431	Canola	cytosol	22.43	56.46
CDY26805	Canola	vacuole	20.54	50.0
Bra037273.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	68.92	49.42
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	68.92	49.32
CDY70273	Canola	cytosol, peroxisome	16.76	48.44
CDY13332	Canola	plastid	33.78	45.79
CDY26807	Canola	cytosol, mitochondrion	71.35	39.94
Os04t0524136-00	Rice	plastid	18.65	34.67
KRH33290	Soybean	nucleus	46.49	33.14
KRH72015	Soybean	nucleus	46.49	32.95
Bra025645.1-P	Field mustard	cytosol	17.57	29.15

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	EntrezGene:100786086	Gene3D:3.50.50.60	EMBL:ACUP02000616	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	EnsemblPlantsGene:GLYMA_01G156600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0055114	UniProt:I1J8A4	InterPro:IPR036188
EnsemblPlants:KRH76499	ProteinID:KRH76499	ProteinID:KRH76499.1	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469
ScanProsite:PS00573	PANTHER:PTHR42863	PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase	UniParc:UPI00023379F7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:49404204..49409037

Molecular Weight (calculated)

39710.5 Da

IEP (calculated)

8.570

GRAVY (calculated)

-0.142

Length

370 amino acids

Sequence
(BLAST)

001: MKFRICPNHH NWKNLLSKAR NLISVGRASS AAFANAMGDV QIHKTKLCII GSGPAAHTAA VYAARAELKP ILFEGWMAND IAPGGQLTTT TDVENFPGFP
101: DGILGGELMD RCRSQSLRFG TEIHTETVSK VDFSARPFRV FTDSRTVEAE SVIVATGAVA KRLPFPGSGD GPDGYWNRGI SACAVCDGAA PIFRNKPLAV
201: IGGGDSAMEE ATFLTKYGSE VYIIHRRDTF RASKIMQSKV MGNSKIKVIW NSVVVEAFGG GDNKRVLGGL KVKNVVTREV SELKVSGLFF AIGHEPATKF
301: LDGQLELDSD GYIVTKPGTT KTSVEGVFAA GDVQDKKYRQ AITAAGTGCM AALDAEHYLQ NVGLQQDKSD

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.