CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
peroxisome 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26806	Canola	cytosol, mitochondrion, peroxisome	38.93	91.34
Bra024516.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	86.91	88.7
CDX74655	Canola	peroxisome, plastid	46.64	80.81
CDY72417	Canola	cytosol	19.8	77.63
CDY22142	Canola	cytosol	19.8	77.63
CDY05719	Canola	cytosol	43.96	73.18
CDY58054	Canola	cytosol	23.49	65.42
PGSC0003DMT400048037	Potato	cytosol	70.81	64.33
Solyc03g032000.2.1	Tomato	cytosol, extracellular	70.13	63.72
CDY07845	Canola	plastid	73.15	63.37
CDY30367	Canola	mitochondrion	72.82	63.27
CDY40633	Canola	mitochondrion	73.83	60.44
Os02t0713400-01	Rice	extracellular, plasma membrane	67.11	60.42
CDX72537	Canola	mitochondrion	72.15	59.72
EES07372	Sorghum	cytosol, mitochondrion	66.11	59.52
CDY41653	Canola	mitochondrion	74.5	59.36
CDY24812	Canola	mitochondrion	74.16	59.25
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	65.77	59.04
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	65.77	59.04
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	65.44	58.91
TraesCS6B01G306300.1	Wheat	cytosol	65.44	58.73
CDX74431	Canola	cytosol	28.86	58.5
PGSC0003DMT400035477	Potato	mitochondrion	71.81	58.31
Solyc02g082250.2.1	Tomato	mitochondrion	71.48	58.04
KRH76499	Soybean	nucleus	69.46	55.95
Zm00001d017823_P001	Maize	cytosol	65.77	55.68
KRH28954	Soybean	nucleus	69.46	55.65
EES09948	Sorghum	mitochondrion	62.08	54.57
TraesCS7B01G194200.1	Wheat	golgi	67.11	54.2
EER89710	Sorghum	mitochondrion	67.11	53.91
Zm00001d037429_P001	Maize	mitochondrion	66.78	53.78
TraesCS7D01G229100.1	Wheat	mitochondrion	66.11	53.39
TraesCS7A01G225400.2	Wheat	mitochondrion	66.44	53.37
Zm00001d053118_P001	Maize	cytosol	61.07	52.15
HORVU7Hr1G046890.1	Barley	plastid	66.11	50.77
KRH07823	Soybean	mitochondrion	66.78	50.51
CDY13332	Canola	plastid	45.97	50.18
GSMUA_Achr9P27590_001	Banana	mitochondrion	59.4	50.0
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	75.17	43.33
CDY26807	Canola	cytosol, mitochondrion	77.85	35.1
CDY70273	Canola	cytosol, peroxisome	11.07	25.78
CDY35405	Canola	plastid	41.28	24.07
CDY22534	Canola	plastid	41.28	24.07
CDX79923	Canola	mitochondrion, plastid	41.61	23.22
CDY23835	Canola	plastid	41.61	22.84
Os04t0524136-00	Rice	plastid	8.05	12.06
CDY26805	Canola	vacuole	4.03	7.89

Protein Annotations

MapMan:10.5.2	Gene3D:3.50.50.60	GO:A0A078JFN0	UniProt:A0A078JFN0	EnsemblPlants:CDY66403	ProteinID:CDY66403
ProteinID:CDY66403.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00053564001	InterPro:IPR036188	PFAM:PF07992
PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PANTHER:PTHR42863	PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS
InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	UniParc:UPI0004EF0E47	SEG:seg	:	:

Description

BnaA06g39230DBnaA06g39230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFN0]

Coordinates

chrLK035250:+:5353..7375

Molecular Weight (calculated)

32557.9 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.354

Length

298 amino acids

Sequence
(BLAST)

001: MDGQRHRSRR PANHHHRRRE LPRLPRRHPR HRHRRQSERF GTKIFTETVT KVDFSSKPFK LFTDSRTVLA DAVIISTGAV AKRLNFAGSG EGAGGFWNRG
101: ISACAVCDGA APIFRNKPLV VIGGGDSAME EANFLTKYGS KVYIIHRRDT FRASKIMQQR ALSNPKIEVI WNSSVVEAYG DEDGKGVLGG LKVKNVVTGD
201: VSDLKVCGLF FAIGHEPATK FLDGQLELDE DGYVVTKPGT TKTSVVGVFA AGDVQDKKYR QAITAAGTGC MAALDAEHYL QEIGSQEVGV ESGLCAKL

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.