CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDX87569
CDX88314
CDX89936
CDX90783
CDY05126
CDY15270
CDY16531
CDY20854
CDY21108
CDY22534
CDY23835
CDY30020
CDY32837
CDY35405
CDY42585
CDY50119
CDY50761
CDY61552
CDY65862
CDY72112

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	CDX89936	AT1G02870.1	21798944
AT2G41680.1	CDY15270	AT1G02870.1	21798944
AT2G41680.1	CDY65862	AT1G02870.1	21798944
AT2G41680.1	CDY16531	AT1G49850.1	21798944
AT2G41680.1	CDY20854	AT1G49850.1	21798944
AT2G41680.1	CDY32837	AT1G49850.1	21798944
AT2G41680.1	CDY61552	AT1G49850.1	21798944
AT2G41680.1	CDX87569	AT1G76760.1	21798944
AT2G41680.1	CDX88314	AT1G76760.1	21798944
AT2G41680.1	CDX79923	AT2G41680.1	21798944
AT2G41680.1	CDY22534	AT2G41680.1	21798944
AT2G41680.1	CDY23835	AT2G41680.1	21798944
AT2G41680.1	CDY35405	AT2G41680.1	21798944
AT2G41680.1	CDY21108	AT3G04860.1	21798944
AT2G41680.1	CDY30020	AT3G04860.1	21798944
AT2G41680.1	CDY50761	AT3G04860.1	21798944
AT2G41680.1	CDY72112	AT3G04860.1	21798944
AT2G41680.1	CDX90783	AT4G10930.1	21798944
AT2G41680.1	CDY05126	AT4G10930.1	21798944
AT2G41680.1	CDY42585	AT5G40440.1	21798944
AT2G41680.1	CDY50119	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004639.1-P	Field mustard	plastid	94.57	96.93
CDY23835	Canola	plastid	94.38	92.82
CDY35405	Canola	plastid	84.27	88.06
CDY22534	Canola	plastid	84.08	87.87
AT2G41680.1	Thale cress	plastid	86.89	87.71
GSMUA_Achr8P09560_001	Banana	cytosol	35.77	82.68
PGSC0003DMT400070106	Potato	cytosol	35.39	81.82
HORVU2Hr1G023170.1	Barley	cytosol	72.66	80.5
GSMUA_Achr8P09570_001	Banana	cytosol	25.47	77.71
KRH33290	Soybean	nucleus	74.53	76.69
KRH72015	Soybean	nucleus	74.53	76.25
VIT_08s0007g08760.t01	Wine grape	plastid	74.72	75.43
Os07t0657900-02	Rice	plastid	72.28	74.95
TraesCS2B01G154700.1	Wheat	plastid	72.47	74.42
Solyc10g080080.1.1	Tomato	plastid	75.09	73.85
PGSC0003DMT400060907	Potato	plastid	73.97	72.74
KXG36845	Sorghum	plastid	71.35	72.71
Zm00001d022381_P016	Maize	plastid	71.91	69.44
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	72.28	68.2
Solyc04g016010.2.1	Tomato	nucleus	66.85	66.48
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.16	63.65
CDY72417	Canola	cytosol	7.12	50.0
CDY22142	Canola	cytosol	7.12	50.0
CDY26806	Canola	cytosol, mitochondrion, peroxisome	11.8	49.61
CDY40633	Canola	mitochondrion	32.96	48.35
CDX72537	Canola	mitochondrion	32.02	47.5
CDY07845	Canola	plastid	29.21	45.35
CDY24812	Canola	mitochondrion	31.65	45.31
CDY30367	Canola	mitochondrion	29.03	45.19
CDY41653	Canola	mitochondrion	31.65	45.19
PGSC0003DMT400070103	Potato	plastid	17.6	43.72
CDY58054	Canola	cytosol	8.43	42.06
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	23.22	41.61
CDX74655	Canola	peroxisome, plastid	13.11	40.7
CDY26805	Canola	vacuole	10.86	38.16
CDY05719	Canola	cytosol	12.17	36.31
CDX74431	Canola	cytosol	9.93	36.05
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.71	34.82
CDY70273	Canola	cytosol, peroxisome	7.87	32.81
CDY13332	Canola	plastid	14.61	28.57
CDY26807	Canola	cytosol, mitochondrion	34.83	28.14

Protein Annotations

KEGG:00240+1.8.1.9	KEGG:00450+1.8.1.9	MapMan:10.5.2	Gene3D:3.40.30.10	Gene3D:3.50.50.60	GO:A0A078CXR7
EnsemblPlants:CDX79923	ProteinID:CDX79923	ProteinID:CDX79923.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00132779001	InterPro:IPR013766	InterPro:IPR036188
PFAM:PF00085	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PFscan:PS51352
PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	SUPFAM:SSF52833
TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EEE617	SEG:seg

Description

BnaA05g02330D

Coordinates

chrLK031819:+:861439..864769

Molecular Weight (calculated)

59036.3 Da

IEP (calculated)

7.557

GRAVY (calculated)

-0.360

Length

534 amino acids

Sequence
(BLAST)

001: MNFSNCMVSV RSKQNKKKMA ASPKIGIGIS SMSTHRVATA SSALSPPPHL FFRDSSFILR QQTRTRSDSL RLRISASANS PSSSGEIIEN VVIIGSGPAG
101: YTAAIYAARA NLKPVVFEGY QMGGVPGGQL MTTTEVENFP GFPEGITGPD LMERMRKQAE RWGAELYPED VESLSVKTAP FTVQSSERKV KCHSIIYATG
201: ATAKRLRLPR EEEFWSRGIS ACAICDGASP LFKGQVLAVV GGGDTATEEA LYLTKYARHV HLLVRRDQLR ASKAMQDRVI NNPNITVHYN TETVDVLSNT
301: KGQMSGILLR RVDTGEETEL EAKGLFYGIG HSPNSQLLEG QVELDSSGYV LVREGTSNTS VEGVFAAGDV QDHEWRQAVT AAGSGCMAAL SAERYLTSNN
401: LLVEFHQPQT EETKKEFTQR DVQEKFDITL TKHRGQYALR KLYHESPRVI CVLYTSPTCG PCRTLKPILN KVVDEYHNDV HFVEIDIEED QEIAEAAGIM
501: GTPCVQFFKN KEMLRTVSGV KMKKEYREFI EANK

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.