Factsheet for TraesCS2A01G132200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

mitochondrion 1
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G228900.1
TraesCS1B01G245100.1
TraesCS1D01G233100.1
TraesCS2A01G132200.1
TraesCS2A01G196200.1
TraesCS2B01G154700.1
TraesCS2B01G223900.1
TraesCS2D01G204300.1
TraesCS3A01G287900.3
TraesCS3A01G509000.1
TraesCS3B01G322600.5
TraesCS3B01G577800.1
TraesCS3D01G287700.1
TraesCS3D01G516800.1
TraesCS4A01G049500.1
TraesCS4A01G237400.1
TraesCS4B01G077700.1
TraesCS4B01G255400.1
TraesCS4D01G076100.1
TraesCS4D01G255100.1
TraesCS5A01G072600.1
TraesCS5A01G122700.4
TraesCS5A01G456500.1
TraesCS5B01G078400.1
TraesCS5B01G122600.1
TraesCS5B01G465500.1
TraesCS5B01G565100.3
TraesCS5D01G085300.1
TraesCS5D01G130900.2
TraesCS5D01G467300.1
TraesCS5D01G549600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	TraesCS1A01G228900.1	AT1G02870.1	21798944
AT2G41680.1	TraesCS1B01G245100.1	AT1G02870.1	21798944
AT2G41680.1	TraesCS1D01G233100.1	AT1G02870.1	21798944
AT2G41680.1	TraesCS4A01G049500.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS4A01G237400.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS4B01G077700.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS4B01G255400.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS4D01G076100.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS4D01G255100.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS5A01G072600.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS5B01G078400.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS5D01G085300.1	AT1G49850.1	21798944
AT2G41680.1	TraesCS3A01G509000.1	AT1G76760.1	21798944
AT2G41680.1	TraesCS3B01G577800.1	AT1G76760.1	21798944
AT2G41680.1	TraesCS3D01G516800.1	AT1G76760.1	21798944
AT2G41680.1	TraesCS2A01G132200.1	AT2G41680.1	21798944
AT2G41680.1	TraesCS2B01G154700.1	AT2G41680.1	21798944
AT2G41680.1	TraesCS2A01G196200.1	AT3G04860.1	21798944
AT2G41680.1	TraesCS2B01G223900.1	AT3G04860.1	21798944
AT2G41680.1	TraesCS2D01G204300.1	AT3G04860.1	21798944
AT2G41680.1	TraesCS5A01G456500.1	AT3G04860.1	21798944
AT2G41680.1	TraesCS5B01G465500.1	AT3G04860.1	21798944
AT2G41680.1	TraesCS5D01G467300.1	AT3G04860.1	21798944
AT2G41680.1	TraesCS3A01G287900.3	AT4G10930.1	21798944
AT2G41680.1	TraesCS3B01G322600.5	AT4G10930.1	21798944
AT2G41680.1	TraesCS3D01G287700.1	AT4G10930.1	21798944
AT2G41680.1	TraesCS5A01G122700.4	AT5G40440.1	21798944
AT2G41680.1	TraesCS5B01G122600.1	AT5G40440.1	21798944
AT2G41680.1	TraesCS5B01G565100.3	AT5G40440.1	21798944
AT2G41680.1	TraesCS5D01G130900.2	AT5G40440.1	21798944
AT2G41680.1	TraesCS5D01G549600.1	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G023170.1	Barley	cytosol	75.04	92.95
TraesCS2B01G154700.1	Wheat	plastid	76.55	87.88
GSMUA_Achr8P09560_001	Banana	cytosol	32.16	83.12
Os07t0657900-02	Rice	plastid	70.35	81.55
PGSC0003DMT400070106	Potato	cytosol	30.99	80.09
KXG36845	Sorghum	plastid	68.34	77.86
GSMUA_Achr8P09570_001	Banana	cytosol	22.45	76.57
KRH33290	Soybean	nucleus	65.16	74.95
Bra000234.1-P	Field mustard	plastid	63.65	74.36
CDY35405	Canola	plastid	63.48	74.17
CDY22534	Canola	plastid	63.32	73.97
KRH72015	Soybean	nucleus	64.49	73.75
Zm00001d022381_P016	Maize	plastid	67.84	73.24
VIT_08s0007g08760.t01	Wine grape	plastid	64.49	72.78
Bra004639.1-P	Field mustard	plastid	63.48	72.74
AT2G41680.1	Thale cress	plastid	64.32	72.59
CDX79923	Canola	mitochondrion, plastid	63.65	71.16
Solyc10g080080.1.1	Tomato	plastid	63.99	70.35
CDY23835	Canola	plastid	63.82	70.17
PGSC0003DMT400060907	Potato	plastid	63.65	69.98
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	65.66	69.26
Solyc04g016010.2.1	Tomato	nucleus	58.46	64.99
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	27.3	49.1
TraesCS7A01G225400.2	Wheat	mitochondrion	28.48	45.82
PGSC0003DMT400070103	Potato	plastid	15.91	44.19

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	Gene3D:3.40.30.10	Gene3D:3.50.50.60	ncoils:Coil	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491
GO:GO:0016671	GO:GO:0019430	GO:GO:0019725	GO:GO:0042744	GO:GO:0042802	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	InterPro:IPR036188	PFAM:PF00085	PFAM:PF07992	PRINTS:PR00368
PRINTS:PR00469	ScanProsite:PS00194	ScanProsite:PS00573	PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1
InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01292
InterPro:Thioredox_Rdtase	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS2A01G132200	EnsemblPlants:TraesCS2A01G132200.1
TIGR:cd02949	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:79314861..79322810

Molecular Weight (calculated)

54365.9 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.211

Length

597 amino acids

Sequence
(BLAST)

001: MAVTRLAVAA ALXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XASCSRAPKS KALRAAAAPA ADAVDEEAPA SPPPSDPGRG VENLVIIGSG PAGYTAAIYA ARANLKPVVF EGYQVGGVPG GQLMTTTEVE
201: NFPGFPDGIT GPDLMDKMRK QAERWGAELH QEDVEFIDVK SRPFVIRSSD REVKSHSVII ATGATAKRLR LPREEEFWSR GISACAICDG ASPLYKGQVL
301: AVVGGGDTAT EEAIYLTKYA CHVHLLVRRD QLRASKAMQD RVLNNPNITV HFNTEAVDVV GNTKGQMSGI QLRRIDTGEE KVLEVKGLFY GIGHTPNSQL
401: LQGQIELDSS GYILVDEGTA KTSVDGVFAA GDVQDHEWRQ AVTAAGSGCI AALSVERYLV SNDLLVEFHQ PVREEKKKEI EGKDVEMGFD ITHTKHKGQY
501: ALRKLYHGSP RLILVLYTSP TCGPCRTLKP ILNKVIDEYD EYVHFVEIDI EEDPEIAEAA GIMGTPCVQF FKNKEMIRTF SGVKMKKEYR EFIESNK

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.