Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G233100.1 | Wheat | nucleus | 99.48 | 99.48 |
| TraesCS1B01G245100.1 | Wheat | nucleus | 99.48 | 99.48 |
| Os05t0367100-01 | Rice | mitochondrion | 84.02 | 83.59 |
| Zm00001d037917_P001 | Maize | mitochondrion | 79.38 | 81.48 |
| EES19406 | Sorghum | mitochondrion | 79.38 | 81.48 |
| GSMUA_Achr3P08100_001 | Banana | mitochondrion | 59.79 | 61.05 |
| KRH71564 | Soybean | nucleus | 49.48 | 57.48 |
| HORVU1Hr1G058480.1 | Barley | mitochondrion | 63.4 | 56.94 |
| PGSC0003DMT400029584 | Potato | mitochondrion, nucleus | 56.7 | 56.41 |
| KRH31880 | Soybean | nucleus | 48.45 | 56.29 |
| Solyc09g075030.2.1 | Tomato | nucleus | 56.7 | 56.12 |
| CDX89936 | Canola | mitochondrion | 55.15 | 55.15 |
| VIT_07s0005g00270.t01 | Wine grape | mitochondrion, nucleus | 55.67 | 54.82 |
| CDY15270 | Canola | mitochondrion | 54.64 | 54.64 |
| Bra033354.1-P | Field mustard | mitochondrion | 53.61 | 53.61 |
| AT1G02870.1 | Thale cress | mitochondrion | 52.06 | 52.33 |
| CDY65862 | Canola | cytosol | 40.21 | 50.65 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G228900.1 | EnsemblPlantsGene:TraesCS1A01G228900 | InterPro:Ribosome_biogenesis_Nop16 | PANTHER:PTHR13243 | PFAM:PF09420 | SEG:seg |
| MapMan:17.1.2.2.1.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:400965699..400969033
Molecular Weight (calculated)
21169.6 Da
IEP (calculated)
10.441
GRAVY (calculated)
-0.480
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSRRKFKR TRTKVRVGLP RKKRREFKPA FDLPEALAAA AAAEAGGHVP SWDAEGSVVK NYSAFGVVAN PNLLGAHSRG TRGLVQSASL QAPDVDALRA
101: PVDEFGPVDT GSDLECDDLK SALGKKRRDG KSAPLEPLTK IQRLCIGRLI EKYGDNYKAM FMDTKLNSMQ HSVGTLKKLC ERYHVGGKTI LYPM
101: PVDEFGPVDT GSDLECDDLK SALGKKRRDG KSAPLEPLTK IQRLCIGRLI EKYGDNYKAM FMDTKLNSMQ HSVGTLKKLC ERYHVGGKTI LYPM
001: MARSRRKYRN SRAKVRVALP KKNPNIFKPA FNFPPKLRAL MGDDVPEWDD QASVIQNYKS FGVISNPNLL GIRARTDHMI QDDSLNVPPP VEPPTDDPIA
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
Arabidopsis Description
At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.