Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g075030.2.1 | Tomato | nucleus | 98.97 | 98.47 |
| CDY15270 | Canola | mitochondrion | 68.72 | 69.07 |
| CDX89936 | Canola | mitochondrion | 68.21 | 68.56 |
| VIT_07s0005g00270.t01 | Wine grape | mitochondrion, nucleus | 69.23 | 68.53 |
| KRH71564 | Soybean | nucleus | 58.46 | 68.26 |
| Bra033354.1-P | Field mustard | mitochondrion | 67.69 | 68.04 |
| AT1G02870.1 | Thale cress | mitochondrion | 66.67 | 67.36 |
| KRH31880 | Soybean | nucleus | 57.44 | 67.07 |
| CDY65862 | Canola | cytosol | 50.77 | 64.29 |
| EES19406 | Sorghum | mitochondrion | 56.41 | 58.2 |
| Zm00001d037917_P001 | Maize | mitochondrion | 56.41 | 58.2 |
| TraesCS1B01G245100.1 | Wheat | nucleus | 56.92 | 57.22 |
| TraesCS1D01G233100.1 | Wheat | nucleus | 56.92 | 57.22 |
| TraesCS1A01G228900.1 | Wheat | nucleus | 56.41 | 56.7 |
| GSMUA_Achr3P08100_001 | Banana | mitochondrion | 53.85 | 55.26 |
| Os05t0367100-01 | Rice | mitochondrion | 54.87 | 54.87 |
| HORVU1Hr1G058480.1 | Barley | mitochondrion | 35.38 | 31.94 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029584 | EnsemblPlantsGene:PGSC0003DMG400011375 | EntrezGene:102594937 | InterPro:Ribosome_biogenesis_Nop16 | PANTHER:PTHR13243 | PFAM:PF09420 |
| PGSC:PGSC0003DMG400011375 | RefSeq:XP_006359382.1 | SEG:seg | UniParc:UPI0002951C3D | UniProt:M1AT20 | MapMan:17.1.2.2.1.6 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011375]
Coordinates
chr9:+:52572167..52574502
Molecular Weight (calculated)
22117.4 Da
IEP (calculated)
9.647
GRAVY (calculated)
-0.841
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSRRKYKR SRTKVRVGLP KKNPNVFKPA FSLPPKLRSL VNSHWDDKGS VIDNYKSFGV VSNPNLLGVR CRTSHMIETD SLQVPPPKKL PPTSDDDDDA
101: DAFEDLDDSG SEVEEDDLKS ALGKKRRDGK SAPLQPLTTI QRVYISRLVE EYGDDYQSMF MDTKLNKMQH SVATLEKLCK RYHMYKDKNP LLVGT
101: DAFEDLDDSG SEVEEDDLKS ALGKKRRDGK SAPLQPLTTI QRVYISRLVE EYGDDYQSMF MDTKLNKMQH SVATLEKLCK RYHMYKDKNP LLVGT
001: MARSRRKYRN SRAKVRVALP KKNPNIFKPA FNFPPKLRAL MGDDVPEWDD QASVIQNYKS FGVISNPNLL GIRARTDHMI QDDSLNVPPP VEPPTDDPIA
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
Arabidopsis Description
At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.