CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033354.1-P	Field mustard	mitochondrion	97.42	97.42
CDY15270	Canola	mitochondrion	97.42	97.42
AT1G02870.1	Thale cress	mitochondrion	92.27	92.75
CDY65862	Canola	cytosol	70.62	88.96
PGSC0003DMT400029584	Potato	mitochondrion, nucleus	68.56	68.21
Solyc09g075030.2.1	Tomato	nucleus	67.53	66.84
KRH71564	Soybean	nucleus	55.15	64.07
KRH31880	Soybean	nucleus	55.15	64.07
VIT_07s0005g00270.t01	Wine grape	mitochondrion, nucleus	64.43	63.45
EES19406	Sorghum	mitochondrion	55.15	56.61
Zm00001d037917_P001	Maize	mitochondrion	55.15	56.61
TraesCS1B01G245100.1	Wheat	nucleus	55.67	55.67
TraesCS1D01G233100.1	Wheat	nucleus	55.67	55.67
Os05t0367100-01	Rice	mitochondrion	55.67	55.38
TraesCS1A01G228900.1	Wheat	nucleus	55.15	55.15
GSMUA_Achr3P08100_001	Banana	mitochondrion	52.06	53.16
HORVU1Hr1G058480.1	Barley	mitochondrion	34.54	31.02

Protein Annotations

EnsemblPlants:CDX89936	EnsemblPlantsGene:GSBRNA2T00150420001	InterPro:Ribosome_biogenesis_Nop16	PANTHER:PTHR13243	PFAM:PF09420	ProteinID:CDX89936
ProteinID:CDX89936.1	SEG:seg	UniParc:UPI0004EE31B0	MapMan:17.1.2.2.1.6	:	:

Description

BnaA10g01460D

Coordinates

chrLK031861:+:839817..841013

Molecular Weight (calculated)

22266.8 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.827

Length

194 amino acids

Sequence
(BLAST)

001: MARSRRKYKN SRAKVRVALP KKNPNIFKPA FNFPPKLRAL MADDVPEWDD QASVIHNYKS FGVISNPNLL GIRSRTDHMI QDDSLNVPPP PQPPTDDPVA
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEAMYR DRKLNSMQHS VATLQKLCIR YHMYKDKNPV LVPF

Best Arabidopsis Sequence Match ( AT1G02870.1 )
(BLAST)

001: MARSRRKYRN SRAKVRVALP KKNPNIFKPA FNFPPKLRAL MGDDVPEWDD QASVIQNYKS FGVISNPNLL GIRARTDHMI QDDSLNVPPP VEPPTDDPIA
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS

Arabidopsis Description

At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.